Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16j09
(660 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC011783-1|AAH11783.1| 312|Homo sapiens RNA pseudouridylate syn... 70 6e-12
AL031033-1|CAB53055.1| 312|Homo sapiens RNA pseudouridylate syn... 70 6e-12
AE006465-1|AAK61255.1| 312|Homo sapiens ribosomal large subunit... 70 6e-12
BC016967-1|AAH16967.2| 545|Homo sapiens RNA pseudouridylate syn... 45 3e-04
BC007697-1|AAH07697.1| 554|Homo sapiens RPUSD2 protein protein. 45 3e-04
AK055971-1|BAB71059.1| 545|Homo sapiens protein ( Homo sapiens ... 45 3e-04
BC014131-1|AAH14131.1| 377|Homo sapiens RNA pseudouridylate syn... 39 0.018
AK027400-1|BAB55086.1| 377|Homo sapiens protein ( Homo sapiens ... 39 0.018
AL353807-3|CAI13211.2| 2964|Homo sapiens ash1 (absent, small, or... 30 8.4
AL353807-2|CAI13212.1| 2969|Homo sapiens ash1 (absent, small, or... 30 8.4
AL139410-7|CAI12716.2| 2964|Homo sapiens ash1 (absent, small, or... 30 8.4
AL139410-6|CAI12722.1| 2969|Homo sapiens ash1 (absent, small, or... 30 8.4
AF257305-1|AAF68983.1| 2969|Homo sapiens ASH1 protein. 30 8.4
AB095939-1|BAC23115.1| 2797|Homo sapiens KIAA2019 protein protein. 30 8.4
>BC011783-1|AAH11783.1| 312|Homo sapiens RNA pseudouridylate
synthase domain containing 1 protein.
Length = 312
Score = 70.1 bits (164), Expect = 6e-12
Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Frame = +2
Query: 329 VEILFENSDYLIVNKPYDMYINSDDENEKNTVAYQIARCDSHLST--SSQPLHFVQRLDY 502
+ I++ + D+L+VNK +D+ I+S E T+ Q+ L+ + F +LD+
Sbjct: 9 LSIVYRSRDFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGFRFCHQLDF 68
Query: 503 ATSGVLCMAKSRPAAASAGKAFEKRLTRKYYLAIVRGHVGFELADVDYGVG 655
+TSG LC+A ++ AA SA + F++R K YLA++RGH+ + + +G
Sbjct: 69 STSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIG 119
>AL031033-1|CAB53055.1| 312|Homo sapiens RNA pseudouridylate
synthase domain containing 1 protein.
Length = 312
Score = 70.1 bits (164), Expect = 6e-12
Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Frame = +2
Query: 329 VEILFENSDYLIVNKPYDMYINSDDENEKNTVAYQIARCDSHLST--SSQPLHFVQRLDY 502
+ I++ + D+L+VNK +D+ I+S E T+ Q+ L+ + F +LD+
Sbjct: 9 LSIVYRSRDFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGFRFCHQLDF 68
Query: 503 ATSGVLCMAKSRPAAASAGKAFEKRLTRKYYLAIVRGHVGFELADVDYGVG 655
+TSG LC+A ++ AA SA + F++R K YLA++RGH+ + + +G
Sbjct: 69 STSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIG 119
>AE006465-1|AAK61255.1| 312|Homo sapiens ribosomal large subunit
pseudouridine synthase C like protein.
Length = 312
Score = 70.1 bits (164), Expect = 6e-12
Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Frame = +2
Query: 329 VEILFENSDYLIVNKPYDMYINSDDENEKNTVAYQIARCDSHLST--SSQPLHFVQRLDY 502
+ I++ + D+L+VNK +D+ I+S E T+ Q+ L+ + F +LD+
Sbjct: 9 LSIVYRSRDFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGFRFCHQLDF 68
Query: 503 ATSGVLCMAKSRPAAASAGKAFEKRLTRKYYLAIVRGHVGFELADVDYGVG 655
+TSG LC+A ++ AA SA + F++R K YLA++RGH+ + + +G
Sbjct: 69 STSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIG 119
>BC016967-1|AAH16967.2| 545|Homo sapiens RNA pseudouridylate
synthase domain containing 2 protein.
Length = 545
Score = 44.8 bits (101), Expect = 3e-04
Identities = 29/95 (30%), Positives = 44/95 (46%)
Frame = +2
Query: 329 VEILFENSDYLIVNKPYDMYINSDDENEKNTVAYQIARCDSHLSTSSQPLHFVQRLDYAT 508
+ +L EN D ++V+KP + ++ NTV + + + H PLH RLD T
Sbjct: 223 IRLLAENEDVVVVDKPSSIPVHPCGRFRHNTVIFILGK--EHQLKELHPLH---RLDRLT 277
Query: 509 SGVLCMAKSRPAAASAGKAFEKRLTRKYYLAIVRG 613
SGVL AK+ + + R K Y+ V G
Sbjct: 278 SGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 312
>BC007697-1|AAH07697.1| 554|Homo sapiens RPUSD2 protein protein.
Length = 554
Score = 44.8 bits (101), Expect = 3e-04
Identities = 29/95 (30%), Positives = 44/95 (46%)
Frame = +2
Query: 329 VEILFENSDYLIVNKPYDMYINSDDENEKNTVAYQIARCDSHLSTSSQPLHFVQRLDYAT 508
+ +L EN D ++V+KP + ++ NTV + + + H PLH RLD T
Sbjct: 232 IRLLAENEDVVVVDKPSSIPVHPCGRFRHNTVIFILGK--EHQLKELHPLH---RLDRLT 286
Query: 509 SGVLCMAKSRPAAASAGKAFEKRLTRKYYLAIVRG 613
SGVL AK+ + + R K Y+ V G
Sbjct: 287 SGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 321
>AK055971-1|BAB71059.1| 545|Homo sapiens protein ( Homo sapiens
cDNA FLJ31409 fis, clone NT2NE2000174. ).
Length = 545
Score = 44.8 bits (101), Expect = 3e-04
Identities = 29/95 (30%), Positives = 44/95 (46%)
Frame = +2
Query: 329 VEILFENSDYLIVNKPYDMYINSDDENEKNTVAYQIARCDSHLSTSSQPLHFVQRLDYAT 508
+ +L EN D ++V+KP + ++ NTV + + + H PLH RLD T
Sbjct: 223 IRLLAENEDVVVVDKPSSIPVHPCGRFRHNTVIFILGK--EHQLKELHPLH---RLDRLT 277
Query: 509 SGVLCMAKSRPAAASAGKAFEKRLTRKYYLAIVRG 613
SGVL AK+ + + R K Y+ V G
Sbjct: 278 SGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 312
>BC014131-1|AAH14131.1| 377|Homo sapiens RNA pseudouridylate
synthase domain containing 4 protein.
Length = 377
Score = 38.7 bits (86), Expect = 0.018
Identities = 23/90 (25%), Positives = 40/90 (44%)
Frame = +2
Query: 335 ILFENSDYLIVNKPYDMYINSDDENEKNTVAYQIARCDSHLSTSSQPLHFVQRLDYATSG 514
IL ++ + +++NKPY + ++ + ++PLH RLD T+G
Sbjct: 99 ILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTG 158
Query: 515 VLCMAKSRPAAASAGKAFEKRLTRKYYLAI 604
V+ +A + A + F R K Y AI
Sbjct: 159 VMVLAWDKDMAHQVQELFRTRQVVKKYWAI 188
>AK027400-1|BAB55086.1| 377|Homo sapiens protein ( Homo sapiens
cDNA FLJ14494 fis, clone MAMMA1003035, weakly similar to
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE C (EC
4.2.1.70). ).
Length = 377
Score = 38.7 bits (86), Expect = 0.018
Identities = 23/90 (25%), Positives = 40/90 (44%)
Frame = +2
Query: 335 ILFENSDYLIVNKPYDMYINSDDENEKNTVAYQIARCDSHLSTSSQPLHFVQRLDYATSG 514
IL ++ + +++NKPY + ++ + ++PLH RLD T+G
Sbjct: 99 ILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTG 158
Query: 515 VLCMAKSRPAAASAGKAFEKRLTRKYYLAI 604
V+ +A + A + F R K Y AI
Sbjct: 159 VMVLAWDKDMAHQVQELFRTRQVVKKYWAI 188
>AL353807-3|CAI13211.2| 2964|Homo sapiens ash1 (absent, small, or
homeotic)-like (Drosophila) protein.
Length = 2964
Score = 29.9 bits (64), Expect = 8.4
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = -2
Query: 521 RARHSWRSPIVGRNVKVAMTLTDENRNALFGKPLCSFRFRHQN*YTCHKACSRLN 357
R S P V + + ++ + + FGK R++H+ + CH +C L+
Sbjct: 1490 REHRSSEQPQVSMDTGSSRSVLESLKRYRFGKDAVGERYKHKEKHRCHMSCPHLS 1544
>AL353807-2|CAI13212.1| 2969|Homo sapiens ash1 (absent, small, or
homeotic)-like (Drosophila) protein.
Length = 2969
Score = 29.9 bits (64), Expect = 8.4
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = -2
Query: 521 RARHSWRSPIVGRNVKVAMTLTDENRNALFGKPLCSFRFRHQN*YTCHKACSRLN 357
R S P V + + ++ + + FGK R++H+ + CH +C L+
Sbjct: 1490 REHRSSEQPQVSMDTGSSRSVLESLKRYRFGKDAVGERYKHKEKHRCHMSCPHLS 1544
>AL139410-7|CAI12716.2| 2964|Homo sapiens ash1 (absent, small, or
homeotic)-like (Drosophila) protein.
Length = 2964
Score = 29.9 bits (64), Expect = 8.4
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = -2
Query: 521 RARHSWRSPIVGRNVKVAMTLTDENRNALFGKPLCSFRFRHQN*YTCHKACSRLN 357
R S P V + + ++ + + FGK R++H+ + CH +C L+
Sbjct: 1490 REHRSSEQPQVSMDTGSSRSVLESLKRYRFGKDAVGERYKHKEKHRCHMSCPHLS 1544
>AL139410-6|CAI12722.1| 2969|Homo sapiens ash1 (absent, small, or
homeotic)-like (Drosophila) protein.
Length = 2969
Score = 29.9 bits (64), Expect = 8.4
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = -2
Query: 521 RARHSWRSPIVGRNVKVAMTLTDENRNALFGKPLCSFRFRHQN*YTCHKACSRLN 357
R S P V + + ++ + + FGK R++H+ + CH +C L+
Sbjct: 1490 REHRSSEQPQVSMDTGSSRSVLESLKRYRFGKDAVGERYKHKEKHRCHMSCPHLS 1544
>AF257305-1|AAF68983.1| 2969|Homo sapiens ASH1 protein.
Length = 2969
Score = 29.9 bits (64), Expect = 8.4
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = -2
Query: 521 RARHSWRSPIVGRNVKVAMTLTDENRNALFGKPLCSFRFRHQN*YTCHKACSRLN 357
R S P V + + ++ + + FGK R++H+ + CH +C L+
Sbjct: 1490 REHRSSEQPQVSMDTGSSRSVLESLKRYRFGKDAVGERYKHKEKHRCHMSCPHLS 1544
>AB095939-1|BAC23115.1| 2797|Homo sapiens KIAA2019 protein protein.
Length = 2797
Score = 29.9 bits (64), Expect = 8.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 233 SLLDK*IREKSSKMNAPNFNFRGFRMSTKNMAVEILFENS 352
SL DK + K SK P F F +S ++E+L + S
Sbjct: 132 SLADKDVTAKDSKFKMPKFKMPSFGVSAPGKSIEVLVDVS 171
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,357,490
Number of Sequences: 237096
Number of extensions: 2043519
Number of successful extensions: 4466
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4457
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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