Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16j09
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016678-2|AAB66153.1| 432|Caenorhabditis elegans Hypothetical ... 35 0.059
Z92829-15|CAB07343.2| 359|Caenorhabditis elegans Hypothetical p... 31 0.72
U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing facto... 29 3.9
U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing facto... 29 3.9
U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor... 29 3.9
U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein. 29 3.9
U06933-1|AAA64938.1| 551|Caenorhabditis elegans CeSWAP protein. 28 6.8
U55365-5|AAN84867.2| 350|Caenorhabditis elegans Serpentine rece... 27 8.9
AC006661-9|AAF39885.1| 337|Caenorhabditis elegans Hypothetical ... 27 8.9
>AF016678-2|AAB66153.1| 432|Caenorhabditis elegans Hypothetical
protein K07E8.7 protein.
Length = 432
Score = 34.7 bits (76), Expect = 0.059
Identities = 20/73 (27%), Positives = 38/73 (52%)
Frame = +2
Query: 317 KNMAVEILFENSDYLIVNKPYDMYINSDDENEKNTVAYQIARCDSHLSTSSQPLHFVQRL 496
+++ + ++ E D +V KP + +++ + +TV Q+ ++ L + RL
Sbjct: 144 RDLPIRVISETDDLFVVEKPPSLPVHTCGQYAIHTVLGQL-----RVNEGRTGLRVLHRL 198
Query: 497 DYATSGVLCMAKS 535
D ATSGVL AK+
Sbjct: 199 DRATSGVLLFAKN 211
>Z92829-15|CAB07343.2| 359|Caenorhabditis elegans Hypothetical
protein F10A3.9 protein.
Length = 359
Score = 31.1 bits (67), Expect = 0.72
Identities = 20/49 (40%), Positives = 24/49 (48%)
Frame = +2
Query: 503 ATSGVLCMAKSRPAAASAGKAFEKRLTRKYYLAIVRGHVGFELADVDYG 649
A GV C A A AGK R R++YL +V+ FE DV YG
Sbjct: 147 ANGGVWCFAA---AVIFAGKEDSDRFLREFYLPLVQNKTSFE--DVYYG 190
>U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
b protein.
Length = 663
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 130 GLQSTVQINADHFLQWHFVHWISYFYYFYSHNKSTHQ 20
GL++ + A LQ HF+ S +Y +Y H HQ
Sbjct: 319 GLEAEASLAAREDLQLHFMEPKSPYYSYYHHKVRMHQ 355
>U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
a protein.
Length = 749
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 130 GLQSTVQINADHFLQWHFVHWISYFYYFYSHNKSTHQ 20
GL++ + A LQ HF+ S +Y +Y H HQ
Sbjct: 403 GLEAEASLAAREDLQLHFMEPKSPYYSYYHHKVRMHQ 439
>U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
d protein.
Length = 751
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 130 GLQSTVQINADHFLQWHFVHWISYFYYFYSHNKSTHQ 20
GL++ + A LQ HF+ S +Y +Y H HQ
Sbjct: 407 GLEAEASLAAREDLQLHFMEPKSPYYSYYHHKVRMHQ 443
>U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein.
Length = 749
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 130 GLQSTVQINADHFLQWHFVHWISYFYYFYSHNKSTHQ 20
GL++ + A LQ HF+ S +Y +Y H HQ
Sbjct: 403 GLEAEASLAAREDLQLHFMEPKSPYYSYYHHKVRMHQ 439
>U06933-1|AAA64938.1| 551|Caenorhabditis elegans CeSWAP protein.
Length = 551
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 130 GLQSTVQINADHFLQWHFVHWISYFYYFYSHNKSTHQ 20
GL++ + A LQ HF+ S +Y +Y H S +Q
Sbjct: 403 GLEAEASLAAREDLQLHFMEPKSPYYSYYHHKVSFYQ 439
>U55365-5|AAN84867.2| 350|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 11 protein.
Length = 350
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 99 SAFIWTVLCRPQFNYSYRIIVHGY 170
S F W +LC QF++++ I++ GY
Sbjct: 41 SFFFWVMLCAKQFHFNFTILL-GY 63
>AC006661-9|AAF39885.1| 337|Caenorhabditis elegans Hypothetical
protein H20J04.7 protein.
Length = 337
Score = 27.5 bits (58), Expect = 8.9
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Frame = +2
Query: 227 CFSLLDK*IREKSSKMNAPNFNFRGFRMSTKNMAVEILFENSDYLIVNKPYDMYINS--- 397
C+ +L R+K+ K+ N K++ +EIL + YLI+ PYD+ + +
Sbjct: 221 CYMILYYLKRQKNKKVL---INTTNMSREEKSVHIEILITSILYLIIIIPYDILMKTKYF 277
Query: 398 DDENEKNTVAYQIA---RCDSHLSTSSQPL 478
+ ++E+ + A + +H S PL
Sbjct: 278 EQDSEEGDARFHFASTFQIFNHFPEISMPL 307
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,633,730
Number of Sequences: 27780
Number of extensions: 335442
Number of successful extensions: 1052
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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