Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16j01
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016687-3|AAC48090.1|  375|Caenorhabditis elegans Paralysed arr...    33   0.15 
Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AF016687-3|AAC48090.1|  375|Caenorhabditis elegans Paralysed arrest
           at two-fold protein6 protein.
          Length = 375

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +3

Query: 498 VQDVQAEGKYAIDSPGSPTAPEIPPEEYTLNENEERAIIEPRSLEDPRVRDLIQVLIDWI 677
           V +++ EG+ A+D    P    +      L E E R  +   +  D ++  ++ +LI W+
Sbjct: 54  VLELELEGREALDQSLVP----VLARNIWLEEGEIRRYLTKETARDQKLAQVVDLLIYWL 109

Query: 678 NDELA 692
           N+ELA
Sbjct: 110 NEELA 114


>Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical
           protein R04D3.6 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 366 EDSFFLYFILSKPPMQNILRLIITIFCL 449
           ED + ++  LS     N L LIIT FC+
Sbjct: 175 EDEYLVFAFLSFSKWPNTLNLIITSFCI 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,234,515
Number of Sequences: 27780
Number of extensions: 239004
Number of successful extensions: 579
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)