Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16i23
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    29   0.42 
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    27   1.3  
SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces p...    25   5.1  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    25   6.8  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   9.0  
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi...    25   9.0  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    25   9.0  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +2

Query: 89   RRHSNKSKADKQVRIYQPTYQLNPRKRFNVEKVEKMLNTILDSELAEVEYSEKLIPELCM 268
            R     + A+K  +++    +    + F+V   E+  NT+    L EVEY   ++ EL  
Sbjct: 1463 RLEDGDNMAEKTQQVWHVNPKFTQYRLFDVRGKERTSNTMSTYNLEEVEYLVNMVDELLN 1522

Query: 269  NLAD 280
               D
Sbjct: 1523 KFPD 1526


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +2

Query: 74  IQLFGRRHSNKSKADKQVRIYQPTYQLNPRKRFNVEKVEKMLNTI 208
           +  F   H NK  A ++   +Q  Y L P     V   E +LN I
Sbjct: 668 LDAFSGTHKNKDIAQRRFETFQTIYDLLPVDENTVAPNESLLNMI 712


>SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 111

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = +2

Query: 179 EKVEKMLNTILDSELAEVEYSEKLIPELCMNLADSIRISVKEENYDRYRIIVSVSIGQRR 358
           +K+E++        L   EY      E+  ++  ++  ++ +E    Y+ IVS ++ Q+ 
Sbjct: 8   KKLEEICLEAAQPVLKASEYDGDKTAEMNQSVIYAVLNALNKETQS-YKWIVSSTLVQKL 66

Query: 359 QQS-----VHVFHSFLWDPERDG 412
            +      VH  H+  W+ E+DG
Sbjct: 67  PEDHPSRGVHAAHAACWNCEKDG 89


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = -1

Query: 302 LLRRSVYCQPDSYTVRELTSHY 237
           ++R ++   P+S ++R++T+HY
Sbjct: 67  VVRNALKANPNSVSIRDITTHY 88


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
 Frame = +2

Query: 50  KISGISKTIQLFGRRHSNKSK--ADKQVRIYQP-----TYQLNPRKRFNVEKVEKMLNTI 208
           K SG+   +Q+F    +NKS   A++ + +        +Y+L     +N E+++K++  +
Sbjct: 519 KYSGVRTKLQVFEENKTNKSAILANQLMTLKSSFSEVMSYELKDDDNYN-EELDKLVEDV 577

Query: 209 LDSELAEVEYSEKLIPELCMNLADSIRISVKEEN 310
              +L E E +E  +  +   L   I +SV+  N
Sbjct: 578 -RKKLQEKEEAESSLRSVRERLEIRISLSVQSIN 610


>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
           Spa1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 401 PDPRGTNGTRVRSVDDVGLCSLK 333
           P+PRG N T  R  + + LC+ K
Sbjct: 27  PNPRGQNHTHGRRRNTLALCTTK 49


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 158 PRKRFNVEKVEKMLNTILDSELAEVEYSEKLIPEL 262
           P  RFNV K  ++L  +L +      Y +++IP L
Sbjct: 532 PNIRFNVAKAFEVLKPVLAAGGDSTVYEQQIIPLL 566


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,971,018
Number of Sequences: 5004
Number of extensions: 39953
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)