Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16i23
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018     33   0.14 
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405...    27   9.0  
05_03_0455 + 14234908-14235014,14235206-14235392,14235628-142363...    27   9.0  
04_03_0252 - 13517763-13517861,13518845-13519315,13519400-135196...    27   9.0  

>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
          Length = 1040

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
 Frame = +2

Query: 173  NVEKVEKMLNTILDSELAEV------EYSEKLIPELCMNLADSIRISVKEENYDRYRIIV 334
            N+EKV K L+T++ + L         +Y+E   PEL +++ D + +SV+  + +   +I 
Sbjct: 937  NMEKVVKFLHTVMSTALVYCSLRCLQKYAEMAYPELLIDIVDPLMLSVENASGEINSVIT 996

Query: 335  SVS 343
            +V+
Sbjct: 997  AVT 999


>05_07_0079 -
           27539389-27539892,27540059-27540343,27540453-27540550,
           27540951-27541042,27541155-27541259,27541360-27541567,
           27542469-27542472,27542742-27542765,27545025-27546266
          Length = 853

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 296 VKEENYDRYRIIVSVSIGQ-RRQQSVHVFHSFLWDPERDGF 415
           VK+ N D+ +    + I   +R Q  HVF    W PE  GF
Sbjct: 399 VKKSNGDKEKRRTRLRIADAKRPQEEHVFGYIDWIPEHHGF 439


>05_03_0455 +
           14234908-14235014,14235206-14235392,14235628-14236395,
           14236455-14236758,14236924-14236991
          Length = 477

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +2

Query: 98  SNKSKADKQVRIYQPTYQLNPRKRFNVEK--VEKMLNTILDSELAEVEYSEKLIPELCMN 271
           SN+  + +  ++Y   Y LNP++ F ++     +ML T L     EV +  K++P+    
Sbjct: 366 SNRWDSQRDQKLYGAAYFLNPKRFFELKSDLANRMLCTKLRHMFNEVLW--KMVPD---- 419

Query: 272 LADSIRISVKEENYDR 319
            A   +IS + ++Y R
Sbjct: 420 EAKQSKISSQSDDYVR 435


>04_03_0252 -
           13517763-13517861,13518845-13519315,13519400-13519679,
           13519747-13519829
          Length = 310

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 322 QDHSFSEHRPTSSTERTR 375
           ++H +  H P+SS+ERT+
Sbjct: 175 EEHEYGHHHPSSSSERTK 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,471,283
Number of Sequences: 37544
Number of extensions: 217444
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)