Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16i23
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.35 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   1.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 299  KEENYDRYRIIVSVSIGQRRQQSVHVFHSFLWDP 400
            K  NYDR  ++ +V   QR + SVH   S+   P
Sbjct: 1039 KYRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVP 1072


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/50 (20%), Positives = 23/50 (46%)
 Frame = +2

Query: 107 SKADKQVRIYQPTYQLNPRKRFNVEKVEKMLNTILDSELAEVEYSEKLIP 256
           ++ D Q  I+ P Y++ P+   +   +++  N  + +   +      LIP
Sbjct: 146 TRQDTQSVIFPPVYEILPQHHLDSRVIQEAQNIAIQNTQGKNNQQNILIP 195


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 128 RIYQPTYQLNPRKRF 172
           R YQP ++  P +RF
Sbjct: 415 RRYQPAFRCKPSQRF 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,558
Number of Sequences: 438
Number of extensions: 2834
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)