Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16i22
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 46 4e-06
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 38 9e-04
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 36 0.006
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 32 0.077
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 29 0.41
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 29 0.41
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 28 0.95
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 28 1.3
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 28 1.3
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb... 27 1.7
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 27 2.2
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 26 3.8
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 26 3.8
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 3.8
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 26 3.8
SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein Nnf1|Schizosacch... 26 3.8
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 26 5.1
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 26 5.1
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 26 5.1
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 5.1
SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr... 25 6.7
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c... 25 8.9
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|... 25 8.9
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc... 25 8.9
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 46.0 bits (104), Expect = 4e-06
Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 8/100 (8%)
Frame = +3
Query: 195 SQAEKRAHHNALERKRRDHIKDSFTSLRESVPALQNEKVVSNRNSEKGA--------SRA 350
S KR+ HN +E++ R ++ D LR++VP L++ + + KG ++A
Sbjct: 423 SPLSKRSAHNMIEKRYRSNLNDKIAELRDAVPTLRSGYNSTTADELKGTYVPLSRKLNKA 482
Query: 351 QILKKAAEYIQFMRRKNNSHQQDIEDLKRQNNILEAQIRA 470
IL KA EYI+ ++ KN ++ + L+++ + + I+A
Sbjct: 483 TILSKATEYIKSLQSKNKKLIEENKILQKRLSEYTSVIQA 522
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 38.3 bits (85), Expect = 9e-04
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Frame = +3
Query: 207 KRAHHNALERKRRDHIKDSFTSLRESVPALQNEKVVSNRNS-----------EKGASRAQ 353
K+ HN +E++ R ++ D LR++VP+L+ + NS + ++
Sbjct: 261 KKTAHNMIEKRYRTNLNDRICELRDAVPSLRAAAALRCGNSLDDEDLGGLTPARKLNKGT 320
Query: 354 ILKKAAEYIQFMRRKNNSHQQDIEDL 431
IL KA EYI+ + KN Q+ + L
Sbjct: 321 ILAKATEYIRHLEAKNKELQKTNKQL 346
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 35.5 bits (78), Expect = 0.006
Identities = 19/81 (23%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +3
Query: 246 DHIKDSFTSLRESVPALQNEKVVSNRNSEKGASRAQI-LKKAAEYIQFMRRKNNSHQQDI 422
+ I+ T RE + ++++++NS+K + I L++ + ++ +R KN++ +I
Sbjct: 463 NQIESLRTQNREIDEEKNHLRLLASKNSDKALAETNIRLQEVTKELETLRMKNSNDLNEI 522
Query: 423 EDLKRQNNILEAQIRALEKAR 485
DL+ +N L +I ++ K +
Sbjct: 523 HDLREENEGLTLKIDSITKEK 543
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 31.9 bits (69), Expect = 0.077
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +3
Query: 207 KRAHHNALERKRRDHIKDSFTSLRESVPALQNEKVVSNRNSEKGASRAQILKKAAEYIQF 386
KR H +ER+RR+ I + L VP + K + + AQ ++ E +
Sbjct: 89 KRLSHKEVERRRREAISEGIKELANIVPGCEKNKGSILQRT------AQYIRSLKEMEEM 142
Query: 387 MRRKNNSHQ----QDIEDLKRQNNILEAQ 461
R K+N + I++L R+N L+++
Sbjct: 143 CREKSNLEKLVADHTIQELARENARLKSE 171
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 29.5 bits (63), Expect = 0.41
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Frame = +3
Query: 216 HHNALERKRRDHIKDSFTSLR-ESVPALQNEKVVSNRNSEKGASRAQIL-----KKAAEY 377
H +A+ RD K+ + +S+P +E++ S ++ A ++L + EY
Sbjct: 35 HTHAITDLIRDTQKEELIAAEFKSLPKDWSERLASENPADYVACIEELLDIYPMQGGREY 94
Query: 378 IQFMRRKNNSHQQDIEDLKRQNNILE--AQIRALEKART 488
++ + K N H IE+L +N +LE Q++ LEK +T
Sbjct: 95 LETLVEKYNLHMSGIENL--ENVLLEQKEQLQQLEKRQT 131
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 29.5 bits (63), Expect = 0.41
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 303 EKVVSNRNSEKGASRAQILKKAAEYIQFMRRKNNSHQQDIEDLKRQNNILEA-QIRALEK 479
E ++ ++K SR QI+ AAE ++K + E + + E QI K
Sbjct: 17 ESLLKKTKAQK-QSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 480 ARTTGNYVDAHE 515
AR GNY HE
Sbjct: 76 ARAEGNYFVPHE 87
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 28.3 bits (60), Expect = 0.95
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +3
Query: 237 KRRDHIKDSFTSLRESVPALQNE-KVVSNRNSEKGASRAQILKKAAEYIQFMRRKNNSHQ 413
K + KD +L + + AL+ E +VV NS+ + + ++NN+ Q
Sbjct: 486 KAHHYAKDQVRNLNDEMVALRAELEVVKAMNSQPDDPDSD----------YAIKQNNALQ 535
Query: 414 QDIEDLKRQNNILEAQIRALE 476
+E L R+N +L++++ LE
Sbjct: 536 NRLEALTRENELLQSRVTTLE 556
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/59 (22%), Positives = 31/59 (52%)
Frame = +3
Query: 294 LQNEKVVSNRNSEKGASRAQILKKAAEYIQFMRRKNNSHQQDIEDLKRQNNILEAQIRA 470
+Q + + + N + + +++KK Q ++ K NS + + + K N+L+A+ R+
Sbjct: 797 VQQIRKLKDENKKDQSGTDKLMKKIYHCEQSLKEKTNSLETLVSEKKELKNLLDAERRS 855
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.9 bits (59), Expect = 1.3
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +3
Query: 198 QAEKRAHHNALERKRRD-HIKDSFT-SLRESVPALQN-EKVVSNRNSEKGASRAQILKKA 368
+A++ + E D IKD+ S ES PA Q +V +N + EK +S A
Sbjct: 365 KADQPENSTKQENPEEDMQIKDAEEHSNLESTPAAQQTSEVEANNHQEKPSSLP-----A 419
Query: 369 AEYIQFMRRKNNSHQQDIEDLKRQNN 446
E I N + +ED K +NN
Sbjct: 420 VEQINVNEENNTPETEGLEDEKEENN 445
>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 209
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +3
Query: 237 KRRDHIK--DSFTSLRESVPALQNEKVVSNRNSEKGASRAQILKK 365
K RD+ K D+F L+++ L N+K+ + +S A+R Q+LK+
Sbjct: 62 KNRDNPKAADAFDILKKAESDLVNDKIRESLDSAYTAARNQLLKE 106
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 27.1 bits (57), Expect = 2.2
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +3
Query: 276 RESVPALQNEKVVSNRNSEKGASRAQILKKAAEYIQFMRRKNNSHQQDIEDLKRQNNIL- 452
++S QN K + G + + LK + E + + S QDI DL++QN L
Sbjct: 99 KDSQELAQNRKRIQELEKSLGDAE-EALKLSNEETVTLTAQVESLTQDITDLRQQNASLV 157
Query: 453 -EAQIRALEKARTTGNYVDAHEL 518
E Q+ + + + D HE+
Sbjct: 158 EENQLLSTQSKQWERRARDEHEM 180
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.2 bits (55), Expect = 3.8
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +3
Query: 198 QAEKRAHHNALERKRRDHIKDSFTSLRESVPALQN--EKVVSNRNSEKGASRAQILKKAA 371
+A +A + E K+ + T L E VP L + E + + +S+K + K +
Sbjct: 531 KAPLQAFLSLSEHKKTEVFDQDDTDL-EPVPRLMSKVESIPAGASSDKSGKSSISKKSSN 589
Query: 372 EYIQFMRRKNNSHQQDIEDLK 434
+ + + NN + DLK
Sbjct: 590 SFKELSPKTNNDEDDEFNDLK 610
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -1
Query: 493 PVVRAFSKALI*ASNILFCLFKSSISCWCELFFLLMNCIY 374
P++ + S+ ++ + NI L S + W E F +L +Y
Sbjct: 310 PIILSISEPIVLSLNIYIGLIYSILYLWFEAFPILFTSVY 349
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 255 KDSFTSLRES--VPALQNEKVVSNRNSEKGAS 344
K + SL+ES + +L N K VSN NS GAS
Sbjct: 71 KATTVSLKESASLTSLSNNKSVSNLNSISGAS 102
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 26.2 bits (55), Expect = 3.8
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 306 KVVSNRNSEKGASRAQILKKAAEYIQFMRRKNNSHQQDIEDLK 434
K V + N EK S + L E IQF + Q+DI DLK
Sbjct: 297 KGVLSSNEEKIESINRDLSSLFEDIQFFISQRTKRQKDIIDLK 339
>SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein
Nnf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 26.2 bits (55), Expect = 3.8
Identities = 24/98 (24%), Positives = 43/98 (43%)
Frame = +3
Query: 189 YYSQAEKRAHHNALERKRRDHIKDSFTSLRESVPALQNEKVVSNRNSEKGASRAQILKKA 368
++ ++ K+ + N + K RD + L E + + K+ + + Q + KA
Sbjct: 51 FFEKSCKQEYANLI--KERD-LNKKLDMLDECIHDAEFRKLHGESEVDISNKQPQEILKA 107
Query: 369 AEYIQFMRRKNNSHQQDIEDLKRQNNILEAQIRALEKA 482
Y R + QD+ D+ ++N L QI A EKA
Sbjct: 108 HLY-SHKRELLDKLNQDLLDIDKENEGLSTQIAAEEKA 144
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 5.1
Identities = 21/78 (26%), Positives = 39/78 (50%)
Frame = +3
Query: 195 SQAEKRAHHNALERKRRDHIKDSFTSLRESVPALQNEKVVSNRNSEKGASRAQILKKAAE 374
S+ EKR N +KRRD I++ + R + L+N++V+ N +S+ + K E
Sbjct: 71 SEDEKRTLPNDEAQKRRDFIENG-DAERLAHKGLRNKEVL-NDDSDDEDDNGKYSKLRYE 128
Query: 375 YIQFMRRKNNSHQQDIED 428
I+ N ++ D ++
Sbjct: 129 DIEGQEDTNQANDLDADE 146
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.8 bits (54), Expect = 5.1
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 139 IQILEHMLETASVEVVAITHRQRREHTTMPSRESDEIT*KIVLHHLENLFLLC 297
++ + H S+EV I + RR++ +RE + IT + + L N+F LC
Sbjct: 319 VRYVVHFFIRDSLEVPFIW-QHRRDYIVHNNRERNTITPLLSQNDLWNIFFLC 370
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 249 HIKDSFTSLRESVPALQNEKVVSNRNSEKGASRAQ 353
++K +S R+ + ++N+K N SEKG A+
Sbjct: 747 NLKYIHSSSRDLIFEMENKKATGNEQSEKGKENAK 781
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.8 bits (54), Expect = 5.1
Identities = 16/83 (19%), Positives = 35/83 (42%)
Frame = +3
Query: 231 ERKRRDHIKDSFTSLRESVPALQNEKVVSNRNSEKGASRAQILKKAAEYIQFMRRKNNSH 410
+ KR D + SLR + LQ + +++ + + L+ ++ + +
Sbjct: 110 QNKRFDALTTENQSLRRANSELQEQSKIASEQLSIAKDQIEALQNENSHLGEQVQSAHQA 169
Query: 411 QQDIEDLKRQNNILEAQIRALEK 479
DIE+ K+Q+ + R E+
Sbjct: 170 LSDIEERKKQHMFASSSSRVKEE 192
>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 112
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +3
Query: 243 RDHIKDSFTSLRESVPALQNEKVVSNRNSEKGASRAQILKKA 368
R H+ SLRE + ALQ ++ + Q +K++
Sbjct: 69 RTHLDAEMASLREDIEALQKKQTYHETTASNAEQHLQKIKES 110
>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 25.0 bits (52), Expect = 8.9
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = +3
Query: 195 SQAEKRAHHNALERKRRD---HIKDSFTS-LRESVPALQNEKVVSNRNSE 332
+++ K H N++E+K + I D + + ES+PALQN + S+ ++
Sbjct: 197 NKSVKLEHKNSIEKKISNVDKPISDLIENDIHESLPALQNPPIQSHSETD 246
>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 104
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 434 FQIFNILLV*IIFSSHELYIFSSLF*YLCTTGPFLTVS 321
F +FN L + I + + LY SSL +L + F+T+S
Sbjct: 61 FPLFNFLFIAIPYFTEILYNDSSLLWFLFVSLCFITLS 98
>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
Nse5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 8.9
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +1
Query: 124 VMPKMIQILEHMLETASVEVVA 189
++PK + +LE++L T S+ + A
Sbjct: 17 LLPKSLDVLEYLLSTTSIPIPA 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,097
Number of Sequences: 5004
Number of extensions: 47519
Number of successful extensions: 173
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -