Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16i19
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    31   0.16 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    28   1.5  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    28   1.5  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    27   3.5  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    26   4.6  
SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.1  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    25   8.1  

>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 274 NILKSRPRLVMTPAV-CMDDI-QLEKREKFIEDFYSTTKNVTMSVPPSNNIKASF 432
           +I   R   V+TP + C + + QLE   K +  ++   +  T+S PPSN   +S+
Sbjct: 82  SIASPRQMQVLTPPLSCPESLPQLEPLYKELRQYFQIAQTSTLSYPPSNGDSSSY 136


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 306 DTSCLYGRHSIRKTREIH*RLLLDDKKCNNECSSF 410
           D   LY   +I  T E + R LLDDKKC +E  +F
Sbjct: 863 DIILLYSEEAIT-TYEENLRNLLDDKKCRDELITF 896


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 52  NNGQILPITATKYIDKEVCLRIPPAPLKYIHTLSH 156
           N    LP+ + + +DK    +I P PL  +H  SH
Sbjct: 355 NKEDHLPLLSDEKLDKSAIDKIEPTPLPSVHMNSH 389


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 178 SVDLFVRPKDVVRTNPRDVQQRYERPKDIEHKNILKS 288
           S DL  RPK +++TN  D     +    +   ++L+S
Sbjct: 26  SEDLIYRPKKIIKTNQEDAVHDLKYENFVSKNHVLQS 62


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 580 KTPQCQVCDETAARLANKKTRNHGKLKLYF 669
           K  +C +CD+ A R  ++  +N+  L+ +F
Sbjct: 267 KHERCYICDQVAGRPTHQYFKNYDSLERHF 296


>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 508 MESVSWDGRQLRAFAEPNKEFWLAKTPQCQVCDETAARLANKKTRN 645
           +  VS D       A PN  FW  K P+ ++C+    + A ++  N
Sbjct: 57  LAGVSIDYVHSLILAYPNDFFWRPKKPRVRICNSWMCQQAAEEQGN 102


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 88  YIDKEVCLRIPPA-PLKYIHTLSHWKPDGRVSVDLFVRPKD 207
           YI++++ LR+PP    +Y+      +  GR   D++V+ KD
Sbjct: 71  YIEEQIILRLPPGEDCEYVRKAIENREVGR-GADIWVKFKD 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,635
Number of Sequences: 5004
Number of extensions: 58942
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)