Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16i19
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    37   0.016
Z92826-9|CAD90172.1|  701|Caenorhabditis elegans Hypothetical pr...    31   0.81 
AL132860-33|CAB60507.2|  701|Caenorhabditis elegans Hypothetical...    31   0.81 
Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class c...    29   4.3  
U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class c...    29   4.3  
AC006629-1|AAK18925.1|  330|Caenorhabditis elegans Hypothetical ...    28   7.6  

>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 12/107 (11%)
 Frame = +1

Query: 142  HTLSHWKP-DGRVSVDLFVRPKDVVRTNPRDVQQRYERPKDIEHKNILKSRP-------R 297
            H + + +P D ++S D+F++P   +R + + ++ R +  K+++ KN  K +P       R
Sbjct: 2615 HRMKYEQPIDAKIS-DMFLKPWKPLRRSKKGIRSRKKYKKNVKAKNTTKLQPMPWKQMLR 2673

Query: 298  LVMTPAVCMDDIQLEK----REKFIEDFYSTTKNVTMSVPPSNNIKA 426
             +    V +  ++L      R K  ED  +  K++ + V PSNN+K+
Sbjct: 2674 KLADYNVNIKRVRLSDFKKIRPKQQEDMETKEKSIEIVVKPSNNLKS 2720


>Z92826-9|CAD90172.1|  701|Caenorhabditis elegans Hypothetical
           protein Y56A3A.1a protein.
          Length = 701

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +1

Query: 193 VRPKDVVRTNPRDVQQRYERPKDIEHKNILKSRPRLVMTPAVCMDDIQLEKRE 351
           ++ KD + +  + ++QR E+ KD+E +N  K   +L ++    +D  + EK E
Sbjct: 71  IKDKDKLNSYRKLIEQRMEQFKDVERENKTKPHSKLGLSAEEKLDPKEKEKAE 123


>AL132860-33|CAB60507.2|  701|Caenorhabditis elegans Hypothetical
           protein Y56A3A.1a protein.
          Length = 701

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +1

Query: 193 VRPKDVVRTNPRDVQQRYERPKDIEHKNILKSRPRLVMTPAVCMDDIQLEKRE 351
           ++ KD + +  + ++QR E+ KD+E +N  K   +L ++    +D  + EK E
Sbjct: 71  IKDKDKLNSYRKLIEQRMEQFKDVERENKTKPHSKLGLSAEEKLDPKEKEKAE 123


>Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical
           protein F18H3.4 protein.
          Length = 459

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 181 VDLFVRPKDVVRTNPRDVQQRYERPKDIEHKNILKSRPRLVMTPAVCMDDIQLE 342
           +D  +   +   TNP D +QR+E   +  H  I K R ++ M    C+D   LE
Sbjct: 7   LDDIIEVNEKTGTNPPD-RQRFENDLEGFHSEIRKIRSQIQMRCKTCLDANPLE 59


>U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform c protein.
          Length = 667

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 325 DDIQLEKREKFIEDF-YSTTKNVTMSVPPSNNIKAS 429
           DDI +E+ E   ED  +S T   T + PPSNN   S
Sbjct: 132 DDIVVEEEEITPEDIEHSPTGVTTQTTPPSNNTSKS 167


>U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform b protein.
          Length = 700

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 325 DDIQLEKREKFIEDF-YSTTKNVTMSVPPSNNIKAS 429
           DDI +E+ E   ED  +S T   T + PPSNN   S
Sbjct: 165 DDIVVEEEEITPEDIEHSPTGVTTQTTPPSNNTSKS 200


>AC006629-1|AAK18925.1|  330|Caenorhabditis elegans Hypothetical
           protein F12E12.5 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 577 AKTPQCQVCDETAARLANKKT-RNHGK 654
           AK PQCQVC     + AN+KT R H K
Sbjct: 24  AKVPQCQVCKR---KFANQKTLRTHMK 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,913,819
Number of Sequences: 27780
Number of extensions: 338262
Number of successful extensions: 945
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)