Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16i18
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 30 0.35
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 1.9
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.5
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 26 5.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.6
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 25 7.6
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 25 10.0
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 25 10.0
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 29.9 bits (64), Expect = 0.35
Identities = 30/103 (29%), Positives = 45/103 (43%)
Frame = +2
Query: 350 ATILEDTIIQIRILDECNSELRIIKTLADIKLLRALKFGIAQPKTADELENIDPKNLECE 529
+T+ ED I ++ +S +R I+ A + L + F + K I K LE E
Sbjct: 200 STVFED--IMSWVVAMSSSTMRPIRHTATVFCLNIMTFLCEKSKELLNEHAIATKQLEKE 257
Query: 530 NYKIYKLDSDRRNIINAITDLYVEMTLNKNYKTLTSFLNSIFD 658
K RN IN + + E+ K TLT++LN FD
Sbjct: 258 E----KRSRVNRNRINELNNSLGEIV--KQQDTLTTYLNDYFD 294
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 194 MSQKQELSSLYKRSLSQLLQMIPET 268
+S+K LSS++K SLSQL+ + T
Sbjct: 614 ISRKPTLSSMFKSSLSQLMTTVSST 638
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 506 DPKNLECENYKIYKLDSDRRNIINAITDLYVEMTLNKNYKTLTSFLNSI 652
D + EC+NY + D+ N + L+ + K Y+T S N +
Sbjct: 818 DQQRNECDNYSNHYNDNSNDNDNDVFLKLHWSKSAIKKYETKASIFNEL 866
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 506 DPKNLECENYKIYKLDSDRRNIINAITDLYVEMTLNKNYKTLTSFLNSI 652
D + EC+NY + D+ N + L+ + K Y+T S N +
Sbjct: 818 DQQRNECDNYSNHYNDNSNDNDNDVFLKLHWSKSAIKKYETKASIFNEL 866
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 618 FLLSVISTYKSVMALMIFLLSESSLYIL 535
FL+ ISTY + A++IFLL +++
Sbjct: 224 FLIKSISTYIACFAMLIFLLCNVGSHVV 251
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 185 SSRMSQKQELSSLYKRSLSQLLQMIPETITVTEEDTMPVEEYTQPSLSYMSSS 343
SS +S L+S SLS +++ T T T S SY+SSS
Sbjct: 161 SSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSS 213
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.4 bits (53), Expect = 7.6
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 1/123 (0%)
Frame = +2
Query: 281 EEDTMPVEEYTQPSLSYMSSSMFATILEDTIIQIRILDECNSELRIIKTLADIKLLRALK 460
E+D++ ++E T +L +S+F T+ Q ++ E N + LL+ +
Sbjct: 299 EDDSLELKEITPEALDIGQTSLFT-----TLNQTQVKKEDNKKF----------LLKEIN 343
Query: 461 FGIAQPKTADELE-NIDPKNLECENYKIYKLDSDRRNIINAITDLYVEMTLNKNYKTLTS 637
+ + ELE + PK +N + KL + + I E+ L+K+ K +
Sbjct: 344 AKLNEDDIDSELEIEVKPKTTALDNIEKSKLSEENEHGIKGKLKQLAEIKLSKDGKPFEN 403
Query: 638 FLN 646
N
Sbjct: 404 EFN 406
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 218 SLYKRSLSQLLQMIPETITVTEEDTMPVEEYTQPSLSYMSSS 343
S K +S++ P I TE T+P E T +L SSS
Sbjct: 120 SANKPWISEVNSFSPSPIGATENPTIPNSEQTVDTLDAASSS 161
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +2
Query: 581 ITDLYVEMTLNKNYKTLTSFLNSIFDKEHY 670
+ D+Y + N N K L S KEH+
Sbjct: 239 VEDIYARLFTNHNKKLALEHLKSFRQKEHF 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,987
Number of Sequences: 5004
Number of extensions: 53668
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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