Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16i16
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    46   5e-06
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         31   0.12 
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   2.6  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    27   2.6  
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    26   4.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   6.0  
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    25   7.9  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
 Frame = +3

Query: 519 EFRECFYLFARS--GQITSLDELTVIMRSLGMSPT---IQELAGYLKGKG-GKMSFADFL 680
           EFRE F LF R   G ITS +EL V+MRSLG SPT   +Q++   +   G G + F +FL
Sbjct: 13  EFREAFSLFDRDQDGNITS-NELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFL 71

Query: 681 EVM 689
            +M
Sbjct: 72  TMM 74


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 385 SSFINEIHYLFLLTNMTITLLFRVEHVIKSNMQSSVICPTY 263
           +SF N +H+ FL   +   L FR+ H+   N + S+IC  Y
Sbjct: 70  NSFSN-LHFFFLFWLLNFILFFRI-HLYSCNFRMSIICEEY 108


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 400 TFSSLSSFINEIHYLFLLTNMTITLLF 320
           TFS +SS  + I  + LLTN  +TLL+
Sbjct: 168 TFSLISSTKSRIRIVTLLTNFLLTLLY 194


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 204 SLSSFHTSYSMKFITKTKNLYVGQITELCILDLIT 308
           +LSS+ T +   FI  TKN Y  + +E      IT
Sbjct: 217 NLSSYKTFFETNFIENTKNFYAKESSEYLASHSIT 251


>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 4   NRLSKNLFVSNQNTLAPPIKMARYFKEQ 87
           N LS N+F + QN LAP  + A+  K +
Sbjct: 100 NSLSSNMFKTGQNPLAPKPEEAKQSKNK 127


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 222  TSYSMKFITKTKNLYVGQITELCIL-DLITCSTRNNSVIVIF 344
            T Y +  +T+ ++  V   T+ CIL D++    R N++I  F
Sbjct: 1210 TDYGVLKLTEVRSFIVDITTQFCILQDVLAPKERANNIINAF 1251


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
 Frame = +3

Query: 522 FRECFYLFAR--SGQI--TSLDELTVIMRSLGMSPTIQELAGYLKGKGGKMSFADFLEVM 689
           +++ F LF R  +G+I  TS+ +L   +R+ G +PT+ E+         ++    FL+V+
Sbjct: 8   YKQAFSLFDRHGTGRIPKTSIGDL---LRACGQNPTLAEITEIESTLPAEVDMEQFLQVL 64

Query: 690 H 692
           +
Sbjct: 65  N 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,049,431
Number of Sequences: 5004
Number of extensions: 65168
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)