Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16i16
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1027 + 25496311-25496811 44 9e-05
07_03_1738 - 29141829-29141989,29142112-29142343,29142751-291427... 39 0.003
05_05_0309 - 23987669-23988042,23989485-23989560 39 0.003
03_02_0817 + 11492699-11492774,11493605-11493978 39 0.003
01_06_1085 + 34414353-34414428,34416038-34416407,34416534-34416651 39 0.003
01_01_1223 + 9886709-9886784,9887566-9887935,9888028-9888097 39 0.003
01_01_1156 - 9194477-9194485,9194801-9195156,9197783-9197858 39 0.003
03_05_1090 + 30313176-30313292,30314162-30314236,30314938-303151... 39 0.004
12_01_0207 - 1559491-1559544,1559806-1560161,1560244-1560363,156... 36 0.024
08_01_0121 - 963297-963743 31 1.2
12_02_0774 - 23035853-23035900,23036027-23036875,23037732-23037905 29 4.7
02_01_0235 - 1563805-1563930,1565093-1565362 28 6.2
>12_02_1027 + 25496311-25496811
Length = 166
Score = 44.4 bits (100), Expect = 9e-05
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Frame = +3
Query: 519 EFRECFYLFARSGQ-ITSLDELTVIMRSLGMSPTIQELAGYLK----GKGGKMSFADFLE 683
EFRE F F + G +L+EL ++RSLG +PT +ELA ++ G + FA+FL
Sbjct: 15 EFRETFAFFDKDGDGCITLEELDTVVRSLGQTPTREELAEMIRDVDVDGNGTIEFAEFLA 74
Query: 684 VM 689
+M
Sbjct: 75 LM 76
>07_03_1738 -
29141829-29141989,29142112-29142343,29142751-29142792,
29143312-29143410,29143575-29143667,29143742-29143876,
29144251-29144290,29144475-29144844,29146575-29146650
Length = 415
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = +3
Query: 519 EFRECFYLFARSGQ-ITSLDELTVIMRSLGMSPT---IQELAGYLKGKG-GKMSFADFLE 683
EF+E F LF + G + EL +MRSLG +PT +Q++ + G G + F +FL
Sbjct: 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN 71
Query: 684 VM 689
+M
Sbjct: 72 LM 73
>05_05_0309 - 23987669-23988042,23989485-23989560
Length = 149
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = +3
Query: 519 EFRECFYLFARSGQ-ITSLDELTVIMRSLGMSPT---IQELAGYLKGKG-GKMSFADFLE 683
EF+E F LF + G + EL +MRSLG +PT +Q++ + G G + F +FL
Sbjct: 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN 71
Query: 684 VM 689
+M
Sbjct: 72 LM 73
>03_02_0817 + 11492699-11492774,11493605-11493978
Length = 149
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = +3
Query: 519 EFRECFYLFARSGQ-ITSLDELTVIMRSLGMSPT---IQELAGYLKGKG-GKMSFADFLE 683
EF+E F LF + G + EL +MRSLG +PT +Q++ + G G + F +FL
Sbjct: 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN 71
Query: 684 VM 689
+M
Sbjct: 72 LM 73
>01_06_1085 + 34414353-34414428,34416038-34416407,34416534-34416651
Length = 187
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +3
Query: 519 EFRECFYLFARSGQIT-SLDELTVIMRSLGMSPTIQELAGYLK----GKGGKMSFADFLE 683
EFRE F LF + G + + EL +MRSLG +PT EL + G + F +FL
Sbjct: 12 EFREAFSLFDKDGDGSITTKELGTVMRSLGQNPTEAELQDMISEVDTDSNGNIEFKEFLG 71
Query: 684 VM 689
+M
Sbjct: 72 LM 73
>01_01_1223 + 9886709-9886784,9887566-9887935,9888028-9888097
Length = 171
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = +3
Query: 519 EFRECFYLFARSGQ-ITSLDELTVIMRSLGMSPT---IQELAGYLKGKG-GKMSFADFLE 683
EF+E F LF + G + EL +MRSLG +PT +Q++ + G G + F +FL
Sbjct: 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN 71
Query: 684 VM 689
+M
Sbjct: 72 LM 73
>01_01_1156 - 9194477-9194485,9194801-9195156,9197783-9197858
Length = 146
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = +3
Query: 519 EFRECFYLFARSGQ-ITSLDELTVIMRSLGMSPT---IQELAGYLKGKG-GKMSFADFLE 683
EF+E F LF + G + EL +MRSLG +PT +Q++ + G G + F +FL
Sbjct: 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN 71
Query: 684 VM 689
+M
Sbjct: 72 LM 73
>03_05_1090 +
30313176-30313292,30314162-30314236,30314938-30315181,
30315701-30315787,30315832-30315995,30316587-30316689,
30317751-30317908,30318025-30318105,30318192-30318344
Length = 393
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +3
Query: 522 FRECFYLFARSGQ-ITSLDELTVIMRSLGMSPTIQELAGYLK----GKGGKMSFADFLEV 686
F+E F LF ++G +L+EL + RSLG+ PT QEL ++ G + F +FL +
Sbjct: 251 FQEAFLLFDKNGDGCITLEELAAVTRSLGLEPTDQELNDMMREVDTDGNGIIDFQEFLSL 310
Query: 687 M 689
+
Sbjct: 311 I 311
>12_01_0207 -
1559491-1559544,1559806-1560161,1560244-1560363,
1561523-1561568,1561741-1561858,1561981-1562093,
1562586-1562658,1562743-1562882,1563005-1563075,
1563228-1563396,1563594-1563659,1564052-1564150,
1564271-1564444,1564720-1564798,1564901-1565007,
1565391-1565435
Length = 609
Score = 36.3 bits (80), Expect = 0.024
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +3
Query: 519 EFRECFYLFARSGQIT-SLDELTVIMRSLGMSPTIQELAGYLK----GKGGKMSFADFLE 683
EFRE F LF + G T + EL +M SLG SPT EL ++ G + F +FL
Sbjct: 460 EFREAFNLFDKDGDGTITSKELGTVMGSLGQSPTEAELKKMVEEVDADGSGSIEFEEFLG 519
Query: 684 VM 689
++
Sbjct: 520 LL 521
>08_01_0121 - 963297-963743
Length = 148
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 525 RECFYLFARSGQ-ITSLDELTVIMRSLGMSPT---IQELAGYLKGKGGKMSFADFLEVMH 692
RE F LF G + EL V+MRSLG +PT ++++A K F FL++M
Sbjct: 15 REAFSLFDTDGDGRIAPSELGVLMRSLGGNPTQAQLRDIAAQEK-LTAPFDFPRFLDLMR 73
Query: 693 IH 698
H
Sbjct: 74 AH 75
>12_02_0774 - 23035853-23035900,23036027-23036875,23037732-23037905
Length = 356
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -2
Query: 318 VLNMLSNPICKVPLFVLHI 262
V NM+ +P+C++ LF LH+
Sbjct: 38 VTNMMGDPLCRIRLFQLHV 56
>02_01_0235 - 1563805-1563930,1565093-1565362
Length = 131
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 149 LIITKIKVNGVANENNLPSISCSLK*RAILIGGAKVF*LETKRFL 15
LI IK NG+ N N I+C K +++ G KV +E + L
Sbjct: 79 LIWNHIKANGLQNPANKREINCDDKLKSLFAGKDKVGMMEIAKLL 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,398,653
Number of Sequences: 37544
Number of extensions: 372761
Number of successful extensions: 693
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -