Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16i15
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...   267   1e-72
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    53   5e-08
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    29   0.90 
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    27   2.7  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   4.8  
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    25   8.4  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   8.4  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   8.4  

>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
            Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score =  267 bits (655), Expect = 1e-72
 Identities = 127/243 (52%), Positives = 174/243 (71%)
 Frame = +1

Query: 1    DYLLTQLKDAQNEMVRHXXXXXXXXAAMGTHRQDVYEQLKFNLYQDDAVTGEAAGIAMGM 180
            +YL  QLK  ++E+V++          M +  + +YE +K  L+ D+AV G AAGI+MG+
Sbjct: 442  EYLREQLKHTEDEIVQYGLLLGIGLTGMASRDETLYESVKTILFNDNAVAGSAAGISMGL 501

Query: 181  VMLGSRHAAAIEDMVAYAQETQHEKILRGLAVGIAFTMYGRLEEADALVQQLLRDKDPLL 360
            +MLG+  +AAI++M+ YA ETQHEKI+RGL +GIA  +YGR +EAD ++++L  D DP L
Sbjct: 502  IMLGTASSAAIDEMLQYAHETQHEKIIRGLGIGIALIVYGRQQEADGIIKELNNDLDPTL 561

Query: 361  RRAGCYTIATAYCGTGNNDSIRTLLHVAVSDVNDDVRRAAVTALGFLLFRTPEQCPSVVS 540
            R AG +  A AYCGT N+  +R +LH++VSDVNDDVRRAAV ALGF+ F+ P    S V 
Sbjct: 562  RYAGMFATALAYCGTSNSKIVRDVLHISVSDVNDDVRRAAVCALGFICFKDPNALISTVE 621

Query: 541  LLAESYNPHVRYGAAMALGIACAGTGNRDAIGLLEPMVKFDPVNFVRQGALIASAMILIQ 720
            LL +SYNPHVRYG+A+ALGIACA +G+  A+ LL  +V+ D  +FVRQGA+IA AMIL Q
Sbjct: 622  LLVDSYNPHVRYGSAIALGIACANSGSNAALDLLSRLVE-DATDFVRQGAMIAQAMILTQ 680

Query: 721  QTE 729
              +
Sbjct: 681  HND 683


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 35/147 (23%), Positives = 73/147 (49%), Gaps = 6/147 (4%)
 Frame = +1

Query: 76  AAMGTHRQDVYEQLKFNLYQDDAVTGEA--AGIAMGMVMLGSRH----AAAIEDMVAYAQ 237
           A  G +R+D+ + L   +   D     +  A +++G++ +G+ +    +  ++ ++   +
Sbjct: 487 AYSGANREDLLDMLSPIVTDTDCPMQLSCLAALSLGLIFVGTCNGDVASTILQTLMEREE 546

Query: 238 ETQHEKILRGLAVGIAFTMYGRLEEADALVQQLLRDKDPLLRRAGCYTIATAYCGTGNND 417
             Q+++  R +A+G+A    G+ + ADA V+ L   +  + R+A       +Y GTGN  
Sbjct: 547 SAQNDQWGRFMALGLALLFNGKQDLADATVETLKAIEGKIARQAEILVDICSYAGTGNVL 606

Query: 418 SIRTLLHVAVSDVNDDVRRAAVTALGF 498
            I+ LLH+     +DD + +  T   F
Sbjct: 607 HIQKLLHICSEPPSDDAKESETTIQTF 633



 Score = 30.3 bits (65), Expect = 0.29
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 466 VRRAAVTALGFLLFRTPE-QCPSVVSLLAESYNPHVRYGAAMALGIACAGTGNRDAIGLL 642
           +R+A   ALG L    P+ +    +S  +   +  V Y A  A+G+  AGT N     LL
Sbjct: 667 IRKAIPLALGLLSASNPQMRIFDTLSRYSHDNDLDVAYNAIFAMGLVGAGTSNARLAQLL 726

Query: 643 EPMVKF 660
             +  +
Sbjct: 727 RQLASY 732



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 529 SVVSLLAESYNPHVRYGAAMALGIACAGTGNRDAIGLLEPMV 654
           +++S   E+ +  +R  A + LG+A +G    D + +L P+V
Sbjct: 463 AILSEYLETGSVKLRASAILGLGLAYSGANREDLLDMLSPIV 504


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 15/67 (22%), Positives = 33/67 (49%)
 Frame = -1

Query: 231 IGNHIFYGSSMSRT*HDHTHSNTCCFSCDSIILIQIKLELFINILSMCAHGS*AQTQAAS 52
           +G+  FYG  +S +  + T  NTC  S +  ++  ++ E+ ++ L   +  S  Q     
Sbjct: 784 LGSRKFYGDYLSASKPNGTLWNTCGLSQNDHVIFSMRCEVLVHKLGRTSKPSPRQLVLTK 843

Query: 51  MSYHLIL 31
            + +L++
Sbjct: 844 KNLYLVI 850


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 684 LPHKVNRIEFNHWFQESNGI 625
           L H++++ +FN WF   NG+
Sbjct: 71  LRHRLSKSQFNEWFLSHNGV 90


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 88  THRQDVYEQLKFNLYQDDAVTGEAAGIAMGMVMLGSRHAAAIE 216
           T+RQ+  E+LK    Q+D +T +   +  GMVML   +    E
Sbjct: 453 TYRQNNLEELK---NQNDYLTSQITNLEEGMVMLNKENTKLSE 492


>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +1

Query: 250 EKILR--GLAVG-IAFTMYGRLEEADALVQQLLRDKDPLLRRAGCYTI 384
           EK+ R  GL++G +A   Y    E    + + +RD+D  + + GC +I
Sbjct: 19  EKVARRIGLSLGKVAVVQYSN-RETSVTIGESVRDEDVFILQTGCGSI 65


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 682  ASQS*QDRI*PLVPRVQWHHDSQYQRRQYPEPWRRRNE 569
            A QS  +R+  L+P V    D Q + +Q  E WR+  +
Sbjct: 1350 AVQSQNNRLSTLIPLVNSDVDIQQEVKQQLEEWRKHGD 1387


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 588 GSGYCLRWYWES*CHWTLGTNG 653
           G+G C R  WE   H T G  G
Sbjct: 501 GNGECFRMAWEKEAHMTCGLCG 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,276
Number of Sequences: 5004
Number of extensions: 53754
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)