Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16i13
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   2.1  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   4.9  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   4.9  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   6.4  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.5  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   8.5  

>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 50  YSFTLIYFCLRFADFWRLDILS 115
           +S+TL Y C +  D W L++L+
Sbjct: 839 FSYTLSYVCEQIPDHWNLNLLA 860


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 195 LTFSCKNQALRTQKVKLLISKGHLPPFEHVRRVKNCH 305
           L++ C    +  +K+K+L S+  +P  E    +KN H
Sbjct: 489 LSWLCVENTVTLKKIKMLFSEASIPIDELTDALKNYH 525


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 69   IFVYGLLIFGVLIFYLGCKAIF 134
            IF YG LIF   IF +  K +F
Sbjct: 1415 IFAYGQLIFTAAIFIMNFKLVF 1436


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 96  QKSANRKQKYIKVKLYLIDLDVRFVDAAIFI 4
           +K  + K+K+  +   L DLD +F+D+ + I
Sbjct: 447 EKGLDNKEKFYGIDYGLEDLDSQFIDSLLHI 477


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 129 LLYSPDKISRRQKSANRKQKYIKVKLYLIDLDVRFVD 19
           LLY  + +SR +     ++K++K +L + +LD   +D
Sbjct: 726 LLYMLEDVSRNKSQLLAEKKHLKSQLMVANLDTYSLD 762


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 470 RTSSPQTSTARHRPPPGLATKIEPALL 550
           RTSSP  S A ++PP  +A +  P LL
Sbjct: 429 RTSSPLASNAENKPP--VAQQSPPVLL 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,440
Number of Sequences: 5004
Number of extensions: 60627
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)