Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16i13
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0209 + 2236530-2237301,2239196-2239297,2239535-2239716,224...    28   6.5  
07_01_0139 - 1014952-1015165,1015271-1015350,1015420-1015629,101...    28   6.5  
05_05_0055 + 21977546-21978061,21978144-21978162,21978168-219784...    27   8.7  
01_05_0497 + 22738716-22738793,22738932-22739015,22739490-227395...    27   8.7  

>10_01_0209 +
           2236530-2237301,2239196-2239297,2239535-2239716,
           2240210-2240420,2240526-2240766,2240861-2241011,
           2241116-2241424
          Length = 655

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -3

Query: 414 TIPHPSSSSHCMIADAAFLESVSVPYNLALDRGVLNN 304
           T+P+ +SSS    A AA  ++  V Y LAL RG LN+
Sbjct: 42  TLPNKTSSSPHHYATAAAGQAPDVVYVLALCRGDLND 78


>07_01_0139 -
           1014952-1015165,1015271-1015350,1015420-1015629,
           1015925-1016044,1016650-1016709,1017129-1017204,
           1018189-1018352,1018428-1018490,1018815-1018902,
           1018997-1019647,1019965-1020449
          Length = 736

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 449 ITITILRRTSSPQTSTARHRPPPGLATKIEPALL 550
           ++I I R  SS +   A H+PPP  AT   P LL
Sbjct: 104 VSIPIARSASSAEFR-AVHQPPPRAATAASPVLL 136


>05_05_0055 +
           21977546-21978061,21978144-21978162,21978168-21978486,
           21978779-21978799,21980780-21980857,21981116-21981359
          Length = 398

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 437 KK*FITITILRRTSSPQTSTARHRPPPGLATKIEPALLASSGS 565
           KK  + +  +     P T+T R RP PG   +  P + A +GS
Sbjct: 60  KKQMVAVQTVHAALLPSTTTTRRRPSPGRLPRRSP-IRARAGS 101


>01_05_0497 +
           22738716-22738793,22738932-22739015,22739490-22739547,
           22739641-22739741,22739870-22739897,22740078-22740109,
           22740163-22740258,22740350-22740443,22741796-22742033,
           22742658-22743024
          Length = 391

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 81  GLLIFGVLIFYLGCK---AIFYFCLFFKVERPLR*FFKRHR 194
           G+L FG   + LG +     + +CLF+ +  PLR  + R++
Sbjct: 60  GVLGFGTFCYLLGARPQDVPYVYCLFYVIFVPLRWIYYRYK 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,428,722
Number of Sequences: 37544
Number of extensions: 409167
Number of successful extensions: 1184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)