Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16i06
         (220 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    23   4.1  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    23   4.1  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    23   4.1  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    23   5.5  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    23   5.5  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    22   9.6  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    22   9.6  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    22   9.6  

>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 75  RCVVQSVLKIFYKAVNLIK 131
           RC+++  + IF+K + L K
Sbjct: 245 RCIIKECVDIFFKCIPLFK 263


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +3

Query: 87  QSVLKIFYKAVNLIKL*IKTVRSYHNVRFFLY 182
           Q+++KI+ K +   +  +      H +R+F+Y
Sbjct: 165 QAIVKIYSKDIEFYEATLAFASKLHGMRWFMY 196


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 71  LTMCGPKRVEDILQGCQPYKTIN*NG 148
           LT  GPK     LQG   + +++ NG
Sbjct: 352 LTSTGPKNTSKQLQGLVQFSSVSPNG 377


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 131 FYKVDSLVEYLQHALDHTSLV 69
           FY +DSL+     A+ HT L+
Sbjct: 506 FYNIDSLLHQQNDAVKHTFLL 526


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 65  VKLTMCGPKRVEDILQGCQPYKTIN*NGTELSQ 163
           V L++C    +E +L+ CQP+   +  G  LSQ
Sbjct: 296 VWLSICEIDALECVLRSCQPWVQHDIYGKLLSQ 328


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 65  VKLTMCGPKRVEDILQGCQPYK 130
           V + MCGPK +  + + C   K
Sbjct: 488 VSILMCGPKELSQLKRLCYRLK 509


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 131 FYKVDSLVEYLQHALDHTSLVL 66
           FY ++S++EY    +  TSL L
Sbjct: 101 FYLINSVMEYSPKIISFTSLFL 122


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 192 YYNDTKKNVHCDSS 151
           Y++DT K+VH  SS
Sbjct: 189 YFDDTDKSVHSKSS 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 819,179
Number of Sequences: 5004
Number of extensions: 12040
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)