Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16i06
         (220 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0403 + 18636953-18637004,18637088-18637299,18638852-186389...    27   1.6  
02_05_0502 + 29569563-29570487,29570548-29570621                       25   8.3  

>02_03_0403 +
           18636953-18637004,18637088-18637299,18638852-18638911,
           18639078-18639158,18639273-18639473,18639575-18639670,
           18639780-18639976,18640067-18640295
          Length = 375

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 18  GFIFVTLNDDNLYYSQ*N*RCVVQSVLKIFYK 113
           GF      DDNL Y +    C++Q++LK+ ++
Sbjct: 175 GFNIELKFDDNLEYQEEELTCILQAILKVVFE 206


>02_05_0502 + 29569563-29570487,29570548-29570621
          Length = 332

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 111 CRISSTRFGPHIVSFTENNIDY 46
           CR  S RFG  I+S T   +D+
Sbjct: 78  CRAQSLRFGTSIISETVTAVDF 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,578,660
Number of Sequences: 37544
Number of extensions: 57012
Number of successful extensions: 78
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)