Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16h23
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 34 0.11
06_01_0156 + 1171717-1174140 31 1.00
01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568... 30 1.3
03_03_0010 + 13712339-13712392,13712506-13712582,13712715-137127... 30 1.7
07_03_0255 + 15866422-15866434,15867907-15868659,15868728-15868909 29 4.0
02_02_0642 + 12585531-12586126,12586292-12586371,12586481-125865... 29 4.0
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 28 5.3
05_06_0223 - 26525618-26526112,26526203-26526370,26526649-265274... 28 5.3
04_04_0935 - 29509135-29511732 28 5.3
09_04_0606 + 18909065-18909218,18909674-18909737,18910895-189110... 28 7.0
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 28 7.0
09_04_0476 - 17922072-17922469,17922546-17923241,17923405-179235... 27 9.3
06_03_1398 - 29867458-29867582,29868460-29868577,29868665-298687... 27 9.3
>05_05_0348 + 24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Frame = +2
Query: 314 KMQFTIQTNYDKLQNLIDKHLDSID------NCLRPLVNEILDEEPNPDDEAQ-TKKLFR 472
K FT+Q +Y K Q ++D H D +D N L+ ++E+ E + + + Q TKKL +
Sbjct: 975 KAAFTVQEDYKKTQEMMDNHKDELDKTKVEYNKLKKAMDELRSSEVDVEYKLQDTKKLAK 1034
Query: 473 K 475
+
Sbjct: 1035 E 1035
>06_01_0156 + 1171717-1174140
Length = 807
Score = 30.7 bits (66), Expect = 1.00
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -1
Query: 246 LFLFIVFVNNFPYFGFNSNKSIKYMTKSGSTATF--CDWHSLATSLAMFFTTFSLQAIVN 73
L + ++ N F S +S Y SG AT C ++ATS A FFT L +I +
Sbjct: 395 LVVVVLCGNGDVLFSLRSIESDNYTMSSGGVATMARCLLRAVATSPAAFFTAIDL-SITS 453
Query: 72 IQIEILIF 49
+ +L++
Sbjct: 454 LLFLVLVY 461
>01_06_1696 +
39256171-39256393,39256513-39256595,39256692-39256831,
39256882-39257398,39257518-39257565,39257832-39258006,
39258122-39258234,39258329-39258425,39258579-39258798,
39258985-39259144,39259233-39259646
Length = 729
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 103 EKHSQRSGQRMPIAKCGRGSRFRHILNRFITVESE 207
+KHS+RS + +P AK G SR H+L R ++ +E
Sbjct: 560 QKHSKRSREYIPSAKAG--SRLPHMLMRALSTSNE 592
>03_03_0010 +
13712339-13712392,13712506-13712582,13712715-13712776,
13713231-13713349,13714928-13715095,13715183-13715212
Length = 169
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 314 KMQFTIQTNYDKLQNLIDKHLDSIDNCLRPLVNEILDEEPNPDDE 448
K FT +TNY +L L KH D L N+ L +EP D +
Sbjct: 43 KCGFT-ETNYTQLTELYQKHRDKDFEILAFPCNQFLRQEPGSDQQ 86
>07_03_0255 + 15866422-15866434,15867907-15868659,15868728-15868909
Length = 315
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 386 DNCLRPLVNEILDEEPNPDDEAQTKKLFRK 475
D C+ V ++DE P P+D A+ ++ FR+
Sbjct: 275 DMCITFAVKLLMDEMPLPEDAAEVEEFFRQ 304
>02_02_0642 +
12585531-12586126,12586292-12586371,12586481-12586539,
12587190-12587462,12587876-12587914,12588086-12588231,
12589495-12589696
Length = 464
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 94 KCGEKHSQRSGQRMPIAKCGRGSRFRHIL 180
KCG +H R + PI+ CG S F H++
Sbjct: 394 KCGRRHINRPNEFSPIS-CGGNSWFLHLI 421
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 443 DEAQTKKLFRKISIFIILASGLGNPGVIITLKEGMAALESVF 568
DE+ K+LF K ++ + +GN G++ TLK +ESVF
Sbjct: 1464 DESHFKELFEKT--LKLMENMVGNEGLLHTLKFLFTCVESVF 1503
>05_06_0223 -
26525618-26526112,26526203-26526370,26526649-26527473,
26527898-26528004,26529701-26529767
Length = 553
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Frame = +2
Query: 224 TKTINRNNLQFFVGDCVDLLIRDSTSIKTLKMQFTIQTNY-----DKLQNLIDKHLDSI 385
+K N ++L + G+ ++L + S+ +KTL + F +TN+ KLQN++ +L+S+
Sbjct: 270 SKAPNLSSL-IYSGNLIELSLGQSSQVKTLDINFYDKTNFLCYVITKLQNIV-PNLESL 326
>04_04_0935 - 29509135-29511732
Length = 865
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 344 DKLQNLIDKH---LDSIDNCLRPLVNEILDEEPNPDDEAQTKKLFR 472
D+L L KH LDS D+ L+ +I + DD AQ +KL R
Sbjct: 689 DELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMR 734
>09_04_0606 +
18909065-18909218,18909674-18909737,18910895-18911023,
18913680-18913830,18914369-18914491,18915638-18915711,
18916048-18916591,18916948-18917085,18917159-18917203
Length = 473
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 499 SEYDKYGYFPEQLLRLGFIIRIRFFVEDF 413
S+ + G+ P+ L+RL F+I I ++DF
Sbjct: 34 SDLRRRGFSPDLLIRLKFVITIIMLIKDF 62
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Frame = +2
Query: 329 IQTNYDKLQNLIDKHLDSIDNCLRPLVN---EILDEEPNPDDEAQTKKLFRKISI 484
++T +KLQ L ++H+D +++ L P+V ++L E + DE + K L K ++
Sbjct: 15 VETLKNKLQALAEQHVDVLES-LAPVVRKRVDVLIEIQSQHDELEAKFLEEKAAL 68
>09_04_0476 -
17922072-17922469,17922546-17923241,17923405-17923569,
17923670-17924105,17924314-17924739
Length = 706
Score = 27.5 bits (58), Expect = 9.3
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Frame = +2
Query: 131 ECQSQNVAVDPDFVIYLIDLLLLNPKYGKLFTKTINRNNLQFFVGDCVDLLIRDST---- 298
+ +S N+ +D +F+ + D +G IN++ L V +LL R +
Sbjct: 534 DVKSSNILLDVNFMAKVSD-------FGASILAPINKSQLVTLVQGTWELLTRKNVFNLD 586
Query: 299 ---SIKTLKMQFTIQTNYDKLQNLIDKHLDSIDN 391
+ K+L M+F +KL+N++D + + +N
Sbjct: 587 APENEKSLSMRFLSAMKENKLENILDDQISNNEN 620
>06_03_1398 -
29867458-29867582,29868460-29868577,29868665-29868757,
29868980-29869117,29869193-29869320,29869417-29869577,
29869683-29869773,29869858-29869914,29870654-29870777
Length = 344
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +2
Query: 146 NVAVDPDFVIYLIDLLLLNPKYGKLFTKTINRNNLQFFVGDCVDLLIRDSTSIKTL 313
N+A+ P F+ Y + L++ F + N+ ++G C + SIK +
Sbjct: 139 NLAIQPGFLTYAVATLVVVAALVLFFEPRYGQTNIMIYLGICSSMGSLTVVSIKAI 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,714,370
Number of Sequences: 37544
Number of extensions: 308960
Number of successful extensions: 766
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -