Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16h23
         (630 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035083-1|AAH35083.2|  622|Homo sapiens chromosome 6 open readi...    94   3e-19
AL049697-1|CAD92567.1|  622|Homo sapiens protein ( Human DNA seq...    94   3e-19
AK093830-1|BAC04234.1|  505|Homo sapiens protein ( Homo sapiens ...    94   3e-19
AB209530-1|BAD92767.1|  449|Homo sapiens huntingtin interacting ...    30   7.8  

>BC035083-1|AAH35083.2|  622|Homo sapiens chromosome 6 open reading
           frame 165 protein.
          Length = 622

 Score = 94.3 bits (224), Expect = 3e-19
 Identities = 52/176 (29%), Positives = 98/176 (55%), Gaps = 1/176 (0%)
 Frame = +2

Query: 92  ENVVKNIANEVARECQSQNVAVDPDFVIYLIDLLLLNPKYGKLFTKTINRNNLQFFVGDC 271
           E+V+++I  E+ +EC +    V    + +++  ++L+P  G    +T+ ++++Q  V  C
Sbjct: 7   ESVIRSIIREIGQECAAHGEIVSETLIAFMVKAVVLDPSNGFNMDRTLMKSDVQNLVKLC 66

Query: 272 VD-LLIRDSTSIKTLKMQFTIQTNYDKLQNLIDKHLDSIDNCLRPLVNEILDEEPNPDDE 448
           +  LL   + S+ T+KMQ     NY      +++H   +++ L  +  EI D      +E
Sbjct: 67  MTRLLDTKNPSLDTIKMQVYFDMNYTNRVEFLEEHHRVLESRLGSVTREITDNRACAKEE 126

Query: 449 AQTKKLFRKISIFIILASGLGNPGVIITLKEGMAALESVFSWNDLKMFVALPRNEK 616
            ++  L+RKI  +++L SGLG+P  I T++E  AAL+SVF   +L  F+ L + +K
Sbjct: 127 LES--LYRKIISYVLLRSGLGSPTDIKTVREVTAALQSVFPQAELGTFLTLSKKDK 180


>AL049697-1|CAD92567.1|  622|Homo sapiens protein ( Human DNA
           sequence from clone RP3-382I10 on chromosome 6q14.3-15
           Contains a novel gene, a TAF13 RNA polymerase II, TATA
           box binding  ).
          Length = 622

 Score = 94.3 bits (224), Expect = 3e-19
 Identities = 52/176 (29%), Positives = 98/176 (55%), Gaps = 1/176 (0%)
 Frame = +2

Query: 92  ENVVKNIANEVARECQSQNVAVDPDFVIYLIDLLLLNPKYGKLFTKTINRNNLQFFVGDC 271
           E+V+++I  E+ +EC +    V    + +++  ++L+P  G    +T+ ++++Q  V  C
Sbjct: 7   ESVIRSIIREIGQECAAHGEIVSETLIAFMVKAVVLDPSNGFNMDRTLMKSDVQNLVKLC 66

Query: 272 VD-LLIRDSTSIKTLKMQFTIQTNYDKLQNLIDKHLDSIDNCLRPLVNEILDEEPNPDDE 448
           +  LL   + S+ T+KMQ     NY      +++H   +++ L  +  EI D      +E
Sbjct: 67  MTRLLDTKNPSLDTIKMQVYFDMNYTNRVEFLEEHHRVLESRLGSVTREITDNRACAKEE 126

Query: 449 AQTKKLFRKISIFIILASGLGNPGVIITLKEGMAALESVFSWNDLKMFVALPRNEK 616
            ++  L+RKI  +++L SGLG+P  I T++E  AAL+SVF   +L  F+ L + +K
Sbjct: 127 LES--LYRKIISYVLLRSGLGSPTDIKTVREVTAALQSVFPQAELGTFLTLSKKDK 180


>AK093830-1|BAC04234.1|  505|Homo sapiens protein ( Homo sapiens
           cDNA FLJ36511 fis, clone TRACH2001249. ).
          Length = 505

 Score = 94.3 bits (224), Expect = 3e-19
 Identities = 52/176 (29%), Positives = 98/176 (55%), Gaps = 1/176 (0%)
 Frame = +2

Query: 92  ENVVKNIANEVARECQSQNVAVDPDFVIYLIDLLLLNPKYGKLFTKTINRNNLQFFVGDC 271
           E+V+++I  E+ +EC +    V    + +++  ++L+P  G    +T+ ++++Q  V  C
Sbjct: 7   ESVIRSIIREIGQECAAHGEIVSETLIAFMVKAVVLDPSNGFNMDRTLMKSDVQNLVKLC 66

Query: 272 VD-LLIRDSTSIKTLKMQFTIQTNYDKLQNLIDKHLDSIDNCLRPLVNEILDEEPNPDDE 448
           +  LL   + S+ T+KMQ     NY      +++H   +++ L  +  EI D      +E
Sbjct: 67  MTRLLDTKNPSLDTIKMQVYFDMNYTNRVEFLEEHHRVLESRLGSVTREITDNRACAKEE 126

Query: 449 AQTKKLFRKISIFIILASGLGNPGVIITLKEGMAALESVFSWNDLKMFVALPRNEK 616
            ++  L+RKI  +++L SGLG+P  I T++E  AAL+SVF   +L  F+ L + +K
Sbjct: 127 LES--LYRKIISYVLLRSGLGSPTDIKTVREVTAALQSVFPQAELGTFLTLSKKDK 180


>AB209530-1|BAD92767.1|  449|Homo sapiens huntingtin interacting
           protein-1-related protein.
          Length = 449

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 591 NIFKSFQEKTLSKAAIPSFNVIITPGLPRPLA 496
           N+F+  Q   LSK   PS +V++ P LP+P A
Sbjct: 376 NVFQLEQAFVLSKQRYPSQHVVLLPQLPQPHA 407


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,168,868
Number of Sequences: 237096
Number of extensions: 1785549
Number of successful extensions: 3317
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3311
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)