Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16h23
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   1.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.9  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 170 VIYLIDLLLLNPKYGKLFTKTINRNNL 250
           +I L  L+ +  +  ++ T T+NRN+L
Sbjct: 237 IIVLYILIAIKLRRSRMLTATVNRNHL 263


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
 Frame = +1

Query: 100 GEKHSQRSGQRMPIAKCGRGSRF---------RHILNRFITVESEIREIVHEN 231
           G+   Q++GQ+   A  GRG+++         R+ LNR       I++I +EN
Sbjct: 254 GKYLQQQAGQQDQQANIGRGAQYLYLHQQLLARYELNRLSNGLGPIKDIDYEN 306


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 338 NYDKLQNLIDKHLDSIDNCLRP 403
           N+  +  L+D  L   DN +RP
Sbjct: 2   NHSNISELLDNLLRGYDNSVRP 23


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 178 LNRFITVESEIREIVHENYKQKQFTVL 258
           ++R+I V   I+   H+N ++   T+L
Sbjct: 282 IDRYIAVTQPIKYAKHKNNRRVWLTIL 308


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = +2

Query: 320 QFTIQT--NYDKLQNLIDK 370
           +  +QT  N DKL NL+DK
Sbjct: 28  ELNLQTIFNEDKLDNLMDK 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,304
Number of Sequences: 438
Number of extensions: 3556
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)