Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16h21
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   2.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   2.9  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   3.9  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    25   5.1  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    24   6.8  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    24   9.0  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    24   9.0  

>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 134 VSVMNNWGFCSQKISRQ 84
           +S+MN++G CSQ IS +
Sbjct: 223 ISIMNDFGQCSQPISEE 239


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 184 STSFGVASSNRTETEKTTPKSIKRQSKVILIN*Y*FASSTKVLNTN 321
           STS  + S+NRT T  T+  SI   S     +   FAS +    +N
Sbjct: 636 STSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESSSFYSN 681


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 99  LRTKAPIIHDTDKLTLLLMARRGFDMQTV 185
           +R +AP + + D+L LLL+ R  F+ + V
Sbjct: 706 IRPEAPWLPEEDELLLLLLRRYSFNWEFV 734


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 202 ASSNRTETEKTTPKSIKRQSKV 267
           A   R E EKT PK + R +K+
Sbjct: 493 ARRRRLEVEKTEPKKLARPAKI 514


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 239 GVVFSVSVLLEDATPKLVDCLHVKPTSRHQQQCQ 138
           G+++   ++LE AT  LVD    + ++ +Q+Q Q
Sbjct: 701 GLIWPAKMVLERATNNLVDLATDRFSNTYQEQVQ 734


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 163 VGLTCKQSTSFGVASSNRTETEKTTPKSIKRQSKV 267
           + +T   S     +S   T   +TTP SIKRQ ++
Sbjct: 128 LAVTNLNSDETNTSSEPVTSPLRTTPNSIKRQKRL 162


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 206 LPTERKPKKPRQSRSNVNQ 262
           LP ER PK P+   +N+ Q
Sbjct: 337 LPAERNPKTPQSFSTNIVQ 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,409,693
Number of Sequences: 5004
Number of extensions: 24167
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)