Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16h20
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 381 CLISWQQLSEPFQNVRV 331
           CLISW  L +P Q +++
Sbjct: 429 CLISWNPLMQPKQPIKL 445


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 321 HLQWHGHHIVSTVM 280
           HLQ H HH+ ST +
Sbjct: 143 HLQNHHHHLQSTAV 156


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 250 YLSLFCILGGFKFGGYC 200
           Y+++  I+GG +FG  C
Sbjct: 632 YITIEAIIGGGEFGDVC 648


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 389 YVCHLENRSSMATHNQERTRSANGWW 466
           YVC  EN +  A+H+   T +    W
Sbjct: 656 YVCTAENAAGTASHSTTLTVNVPPRW 681


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 220 NHPRCRRDSDT*EDQRKSTQHY 285
           +HPR +R   T E +   ++HY
Sbjct: 155 HHPRYKRPRTTFEPRATDSRHY 176


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 595 LKGNLSDIILNMSCTSAYSHLPPTSRMILPD 503
           LKG  +  I  +SC + +S L   S  +L +
Sbjct: 412 LKGPANPDIFRVSCATEHSQLTNISEEVLKE 442


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 595 LKGNLSDIILNMSCTSAYSHLPPTSRMILPD 503
           LKG  +  I  +SC + +S L   S  +L +
Sbjct: 118 LKGPANPDIFRVSCATEHSQLTNISEEVLKE 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,493
Number of Sequences: 438
Number of extensions: 4513
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)