Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16h17
(321 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 31 0.20
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 29 0.81
04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521 29 0.81
12_02_0046 + 12830974-12832386 27 2.5
04_03_1017 + 21747044-21748051 27 2.5
11_06_0610 - 25449085-25453284 27 3.3
03_01_0515 - 3864796-3865425 27 3.3
02_05_1200 - 34922073-34922273,34922397-34922469,34922976-349230... 27 4.3
08_01_0084 - 613255-613989 26 5.7
08_01_0082 - 588269-588434,590800-591653 26 5.7
04_04_0187 - 23411085-23411477,23411626-23411631 26 5.7
04_03_0801 - 19828175-19828770,19828913-19828994 26 5.7
09_03_0192 + 13344558-13344942,13345038-13345591 26 7.6
07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123 26 7.6
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 26 7.6
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 31.1 bits (67), Expect = 0.20
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +1
Query: 70 GYXPPVCSPPDCRPICGPASPLLCQSSVPP 159
G PP C PP C C P PL C PP
Sbjct: 128 GICPPPCPPP-CPLPCPPPCPLPCPPPCPP 156
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 29.1 bits (62), Expect = 0.81
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 128 LRSFARAACHQHNGAIL*ILASTYTAVTLKLCNAMDDFYSE 250
+RSF C+ N ++ ++L CN M+D+Y E
Sbjct: 829 VRSFVATECNNGNNSVAPPRFQVLRVLSLDKCNGMEDYYIE 869
>04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521
Length = 136
Score = 29.1 bits (62), Expect = 0.81
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 91 SPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYSC 207
S PDC CG SP C + V + +C PC +Y C
Sbjct: 89 SLPDCSHACGACSP--C-NRVMVSFKCSIAEPCPMVYRC 124
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.5 bits (58), Expect = 2.5
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Frame = +1
Query: 79 PPVCSPPDCRPICGP--ASPLLCQSSV---PPTQRCYPVNP 186
PPV SPP + I GP ASP QS V P C P P
Sbjct: 279 PPVPSPPCAKKIRGPVSASPAARQSCVAASAPPPWCVPPPP 319
>04_03_1017 + 21747044-21748051
Length = 335
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1
Query: 79 PPVCSPPDCRPICGPASPLLCQS---SVPPTQRCYP 177
PP + PD P P+SPL + +VPP +R +P
Sbjct: 270 PPRAASPDYTPSTPPSSPLPSAAESFTVPPPRRYHP 305
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 79 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 186
PPV SPP P+ P P+ +S PP P P
Sbjct: 1195 PPVKSPPPPAPVISPPPPV--KSPPPPAPVILPPPP 1228
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 79 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 186
PP+ SPP P+ P P+ +S PP P P
Sbjct: 1163 PPIKSPPPPAPVISPPPPV--KSPPPPAPVILPPPP 1196
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 79 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYS 204
PP SPP P P SP+ +SS PP PV +N Y+
Sbjct: 94 PPAASPPPPPPSPPPPSPV--KSSPPPPPAWSPVTN-VNDYT 132
>02_05_1200 -
34922073-34922273,34922397-34922469,34922976-34923019,
34923107-34923183,34923433-34923529,34923668-34924062,
34926577-34926620,34926702-34926770,34926856-34926956,
34927689-34927856,34927940-34928141,34928269-34928708,
34928786-34928884,34929123-34929263
Length = 716
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 139 CQSSVPPTQRCYPVNP 186
C SS+PPTQ Y NP
Sbjct: 453 CDSSLPPTQSLYKGNP 468
>08_01_0084 - 613255-613989
Length = 244
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 175 DSTVVLVARCSGKGAEMQVHRSDDNPEVNRLV 80
D TV + RC+G+GAE VH + V+ +V
Sbjct: 102 DGTVTVALRCTGEGAEF-VHAAAPGVAVSDVV 132
>08_01_0082 - 588269-588434,590800-591653
Length = 339
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 175 DSTVVLVARCSGKGAEMQVHRSDDNPEVNRLV 80
D TV + RC+G+GAE VH + V+ +V
Sbjct: 104 DGTVTVALRCTGEGAEF-VHAAAPGVAVSDVV 134
>04_04_0187 - 23411085-23411477,23411626-23411631
Length = 132
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +1
Query: 73 YXPPVCSPPDCRPICGPASPLLCQSSVPP 159
Y PP PP P C P P + PP
Sbjct: 90 YWPPYWCPPPEDPTCKPCYPRYSYAPPPP 118
>04_03_0801 - 19828175-19828770,19828913-19828994
Length = 225
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Frame = +1
Query: 70 GYXPPVCSPPDC--RPICGP 123
G P CSPP C +P+C P
Sbjct: 186 GCKKPCCSPPPCPWQPVCPP 205
>09_03_0192 + 13344558-13344942,13345038-13345591
Length = 312
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 82 PVCSPPDCRPICGPASPLL 138
P+C P P+C SPLL
Sbjct: 162 PLCIEPPSSPVCNAPSPLL 180
>07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123
Length = 369
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 141 PEQRATNTTVLSCKSLHQHIQLLHSNYVTQW 233
P++ ATN T L C ++ HSNY W
Sbjct: 129 PDEEATNHTALPCPG-ELLVEEHHSNYGEPW 158
>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 111 DLWTCISAPLPEQRATNT--TVLSCKSLHQHIQL 206
D W + +P+ R T T + LSC + QHIQ+
Sbjct: 1211 DYWEKVK-DIPDLRVTRTLASFLSCSEILQHIQI 1243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,044,821
Number of Sequences: 37544
Number of extensions: 166135
Number of successful extensions: 550
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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