Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16h14
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    27   1.7  
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...    26   2.3  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   5.3  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   5.3  
SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   7.0  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.0  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    24   9.3  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    24   9.3  

>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 328 LRFSYRYSQGRLRF*NVASSTRLFASKLGLLWTGFYGRPKLE 203
           ++F+Y Y+  +    +      L AS+   +WTG YG+ + E
Sbjct: 413 IKFNYDYTPPKSATSHKHKRVDLLASRKENVWTGLYGKVQTE 454


>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 272 KYPIIRLEVRPSLDGILWKAQTRMAAGTDF 183
           KYPI+ +E     D   W A T M A TDF
Sbjct: 288 KYPIVSIE--DPFDQDDWSAWTHMKAETDF 315


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 214 PKLEWQLGRISSKRF*LYTF 155
           PK EW LG++ SK F L TF
Sbjct: 448 PKSEWSLGKL-SKPFQLITF 466


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 102 TANRRSVGHFLYSCL*TEHF 43
           T+N + V HF++SC    HF
Sbjct: 883 TSNAKDVSHFVFSCPYYTHF 902


>SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 161

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -2

Query: 225 SMEGPN*NGSWDGFLQSGF-DFIPFTPNCSSRIRVARFRRTYTANRRSVGHFLYS 64
           SM GP   G ++ +    F +F P      +R    RF R  +    SVGH LYS
Sbjct: 48  SMSGPF-TGPYEKYSSGYFSEFGPQHLFSINRYHGLRFSRQSSQEYDSVGHILYS 101


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 378 TLLPL*MIKLAVCLIKYCVIEKK 446
           TLL   ++K  +CLI Y +I KK
Sbjct: 413 TLLASLLVKPTLCLISYLMIAKK 435


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 335 NMAPIFLPVLPGSFAILKCRFKYPIIR 255
           NM+  FL VL   F+    +++YPI++
Sbjct: 598 NMSSNFLSVLLNVFSSTPSQYRYPILK 624


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 7   LLVCHQNYKNSNKVLCL 57
           +L+C  +YKN+  +LCL
Sbjct: 174 VLICSNDYKNALWILCL 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,387
Number of Sequences: 5004
Number of extensions: 40939
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)