Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16h14
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016425-12|AAB65336.1|  190|Caenorhabditis elegans Histone h1 l...    30   0.88 
U49830-9|AAV58880.1|  336|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U49830-8|AAK31475.1|  439|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AC084157-1|AAK68492.2|  185|Caenorhabditis elegans Hypothetical ...    27   4.7  

>AF016425-12|AAB65336.1|  190|Caenorhabditis elegans Histone h1 like
           protein 6 protein.
          Length = 190

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +1

Query: 163 KVKTALKKSVPAAILVWAFHRIPSREGLTSRRIIGYLKRHFKIANDPGSTGKKIGAMLRS 342
           KVKTA        ++  A   +  R+G +   I+ Y+  ++K+    G   KKI + LRS
Sbjct: 28  KVKTAAAHPPFINMVTAAISSLKERKGSSKIAILKYITANYKL----GDQVKKINSNLRS 83

Query: 343 AVDFGLLEK 369
           A+  G+  K
Sbjct: 84  ALKKGVASK 92


>U49830-9|AAV58880.1|  336|Caenorhabditis elegans Hypothetical
           protein C33F10.7b protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 117 FRRTYTANRRSVGHFLYSCL*TEHFIGIFIVLMTNEKN 4
           FRR   + +R+VG F    + T+H+I I I   +NE+N
Sbjct: 178 FRRV-DSQKRTVGQFFKDEIATKHYIDIHIGECSNEEN 214


>U49830-8|AAK31475.1|  439|Caenorhabditis elegans Hypothetical
           protein C33F10.7a protein.
          Length = 439

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 117 FRRTYTANRRSVGHFLYSCL*TEHFIGIFIVLMTNEKN 4
           FRR   + +R+VG F    + T+H+I I I   +NE+N
Sbjct: 203 FRRV-DSQKRTVGQFFKDEIATKHYIDIHIGECSNEEN 239


>AC084157-1|AAK68492.2|  185|Caenorhabditis elegans Hypothetical
           protein Y46E12BR.1 protein.
          Length = 185

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = -1

Query: 181 SKRF*LYTFYSEL*LPNSCSTFSTNIHC*SKKCRSFFV*LFVNRALYWNFYSFDDKREEC 2
           S  F +  F S   +PN  S F++  H  +K C S ++ +          + F++ R++C
Sbjct: 95  SDNFFILIFLSNFHVPNLLSCFTSKDHFKTKICSSMYIVIISLIEKIIKSFIFENFRQQC 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,672,128
Number of Sequences: 27780
Number of extensions: 224862
Number of successful extensions: 441
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)