Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16h14
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   8.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.1  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   8.1  

>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
          preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 8  FSFVIKTIKIPIKC 49
          FSFV+  + IP KC
Sbjct: 17 FSFVVILLIIPSKC 30


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -1

Query: 328 LRFSYRYSQGRLRF*NVAS-STRLFASKL--GLLWT 230
           +   +RY   RL+F N+A    +++  +    L+WT
Sbjct: 64  MMLQFRYLDARLKFSNIAPYLNQIYGGQFVRDLIWT 99


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 339 VSSGFRSVRKKRETLL 386
           VSSGFRS  +  +TL+
Sbjct: 40  VSSGFRSSLRNYKTLI 55


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 8  FSFVIKTIKIPIKC 49
          FSFV+  + IP KC
Sbjct: 17 FSFVVILLIIPSKC 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,595
Number of Sequences: 438
Number of extensions: 2917
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)