Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16h12
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                      260   9e-70
07_01_0756 + 5819367-5820038,5820847-5821005                          256   8e-69
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     69   2e-12
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216...    46   3e-05
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509...    29   3.1  
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161...    28   5.4  
01_06_0210 - 27559090-27559239,27560445-27560567,27561069-275611...    28   5.4  
11_01_0395 + 2999855-2999920,3000605-3002191                           28   7.2  
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400...    27   9.5  
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575...    27   9.5  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score =  260 bits (636), Expect = 9e-70
 Identities = 116/156 (74%), Positives = 140/156 (89%)
 Frame = +3

Query: 171 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 350
           ++++++WVPVTKLGRLV+EG+  K+E IYL SLP+KE +I++  + P L DEV+KI PVQ
Sbjct: 38  RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96

Query: 351 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIXGAIILAKLSXLPVRXGYWGNK 530
           KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAI GAIILAKLS +PVR GYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 531 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 638
           IG+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A V
Sbjct: 157 IGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 192


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score =  256 bits (628), Expect = 8e-69
 Identities = 116/156 (74%), Positives = 139/156 (89%)
 Frame = +3

Query: 171 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 350
           ++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++  + P L DEV+KI PVQ
Sbjct: 41  RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99

Query: 351 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIXGAIILAKLSXLPVRXGYWGNK 530
           KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAI GAIILAKLS +PVR GYWGNK
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 159

Query: 531 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 638
           IGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A V
Sbjct: 160 IGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHV 195


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 41/84 (48%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
 Frame = +3

Query: 390 FVAIGDNNGHIGLGVKCSKEVATAIXGAIILAKLSXLPVRXGYWGNKIG-KPHTVPCKVT 566
           FV +GD + HI LGVKC+K  AT + GAIILA         G     I  KPHTV CKV 
Sbjct: 2   FVVVGDGDSHIELGVKCAK--ATTMSGAIILAMFRCAE---GATRETISRKPHTVSCKVA 56

Query: 567 GKCGSVTVRLIPAPRGTGIVSAPV 638
            K GSVTVR++  P G+ +V+  V
Sbjct: 57  DKYGSVTVRMMLPPMGSSVVATRV 80


>03_04_0238 -
           19219040-19219218,19220296-19220350,19221606-19221690,
           19222068-19222798
          Length = 349

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 21/63 (33%), Positives = 38/63 (60%)
 Frame = +3

Query: 318 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIXGAIILAKLSX 497
           ++ V+++  V K  + G++  F+A V +GD  GH+G+GV  +KEV  AI  A +  + + 
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230

Query: 498 LPV 506
           + V
Sbjct: 231 VTV 233


>11_04_0439 +
           17749634-17749858,17750164-17750301,17750770-17750943,
           17751099-17751184,17751264-17751525,17751616-17751815,
           17753631-17754086,17754198-17754474,17754694-17754828,
           17754946-17755026,17756305-17756400,17756676-17756771,
           17756844-17756900,17756975-17757043,17757158-17757237,
           17758185-17758329,17758422-17758511,17758914-17758994,
           17759103-17759198,17759279-17759335,17759417-17759461,
           17759547-17759612,17760304-17760350,17762771-17762865,
           17763375-17763393,17763438-17763498,17763637-17763660
          Length = 1085

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 452 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 336
           +F+A LHT  +M   V      +E C LS    F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693


>04_03_1049 + 22015053-22015083,22015770-22015885,22016013-22016108,
            22016229-22016285,22016468-22016620,22016754-22016838,
            22017097-22017187,22017324-22017488,22017813-22017932,
            22018020-22018104,22018234-22018402,22019055-22019173,
            22019250-22019440,22019746-22019957,22020905-22021500,
            22022538-22022658,22023439-22023868,22024412-22024797,
            22024976-22025071,22025380-22025432,22026915-22027061,
            22027139-22027309,22027880-22027962,22028049-22028247,
            22028668-22028789,22029752-22029818,22029960-22030010,
            22030768-22031001,22031263-22031451,22032455-22032646,
            22032742-22032936
          Length = 1673

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 126  DRHGLYLHRVIRIRRENRHVHRLEQRPP 43
            D HGL+    + +    RH+HR+E +PP
Sbjct: 1006 DMHGLHASEAVEVLE--RHLHRIEFQPP 1031


>01_06_0210 -
           27559090-27559239,27560445-27560567,27561069-27561128,
           27562045-27562068,27562313-27562653,27562684-27563731
          Length = 581

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 205 NSAVLFAK-EKSTNSRAFTCFLYQSKNSRSLISSSARP*MMRFLRSCLYRNKHVPDSAHV 381
           N AV+ A   K    RAF   +YQS  +R +   S +P     L  CL +  ++  +AHV
Sbjct: 381 NDAVVTALCSKGEVVRAFQ--VYQSMRTRGI---STKPTTFHLLVECLSKKNNLEKAAHV 435

Query: 382 SRHLL 396
            R +L
Sbjct: 436 VRDML 440


>11_01_0395 + 2999855-2999920,3000605-3002191
          Length = 550

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 258 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 377
           +F   +++ ++IDF L   L D  + I+P+    R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276


>11_01_0515 +
           4003167-4003229,4003318-4003738,4004224-4004367,
           4004474-4004556,4004661-4004775,4005309-4005400,
           4005558-4005612,4005689-4005834,4005888-4006001,
           4006149-4006342,4006985-4007112,4008526-4008583,
           4009800-4009876,4010214-4010263,4010336-4010515,
           4010633-4010731,4010816-4011133,4011221-4011281,
           4011693-4012781,4012951-4013005,4013133-4013291,
           4013923-4014442
          Length = 1406

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 174 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLG 308
           +  KE +P    G  V  G+    +++ + SLPIK++ +  FF G
Sbjct: 805 DGSKEVIPQEYCGLEVLSGEAAWSKNVLVPSLPIKKYPVHSFFSG 849


>05_07_0112 -
           27755604-27756449,27756624-27756887,27757428-27757532,
           27757626-27758249,27759048-27759596,27759665-27760372,
           27760449-27760658,27761266-27761421,27761524-27761664,
           27762015-27762101,27762209-27762309,27763071-27763293,
           27763384-27763548,27763621-27763713,27763801-27764292,
           27764729-27764805,27765184-27765681,27765818-27766046
          Length = 1855

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -2

Query: 577 PHLPVTL-QGTVCGFPILLPQ*PXRTGRXDSLARIIAPXMAVATSLLHFTPKPI*PLLSP 401
           PH  +T+  G + G P+L P     TGR  ++ RI A  +A      +  P+ + P L+P
Sbjct: 141 PHSELTMGTGGMYGEPLLSPSSRRGTGRPSAVPRISASEVA---RRYYEPPQVMLPPLAP 197

Query: 400 M-ATNALKRV 374
           M  T A  RV
Sbjct: 198 MQLTRAEHRV 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,526,740
Number of Sequences: 37544
Number of extensions: 340687
Number of successful extensions: 991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)