Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16h10
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    29   3.3  
U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose 6-pho...    29   4.4  
U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose 6-pho...    29   4.4  
AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative treh...    29   4.4  
AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans trehalose-6-p...    29   4.4  

>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +2

Query: 266 AKHLRMPEQPKWHVTHFLQQKRE*DLVR-ACIKP---KSW-ELEKKLGAKNLSAMPHR 424
           A  +R+  +P +H+THFL + RE   +  A  KP   + W    K L  +N+   P R
Sbjct: 518 APEVRIEPEPAYHLTHFLHKMREEKKIEIASEKPEKKEDWLSYLKNLRTRNILPAPAR 575


>U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose
           6-phosphate synthaseprotein 1, isoform b protein.
          Length = 1294

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = +3

Query: 186 SIWKQRKRTK**ALEALILLNKLSLNQPS 272
           +IWK+R++    AL+ L+++ +L L+QPS
Sbjct: 118 AIWKKRQKNSEIALKGLMIVLELCLSQPS 146


>U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose
           6-phosphate synthaseprotein 1, isoform a protein.
          Length = 1331

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = +3

Query: 186 SIWKQRKRTK**ALEALILLNKLSLNQPS 272
           +IWK+R++    AL+ L+++ +L L+QPS
Sbjct: 155 AIWKKRQKNSEIALKGLMIVLELCLSQPS 183


>AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative
           trehalose 6-phosphatesynthase protein.
          Length = 1331

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = +3

Query: 186 SIWKQRKRTK**ALEALILLNKLSLNQPS 272
           +IWK+R++    AL+ L+++ +L L+QPS
Sbjct: 155 AIWKKRQKNSEIALKGLMIVLELCLSQPS 183


>AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans
           trehalose-6-phosphate synthase protein.
          Length = 1331

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = +3

Query: 186 SIWKQRKRTK**ALEALILLNKLSLNQPS 272
           +IWK+R++    AL+ L+++ +L L+QPS
Sbjct: 155 AIWKKRQKNSEIALKGLMIVLELCLSQPS 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,759,072
Number of Sequences: 27780
Number of extensions: 257459
Number of successful extensions: 559
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)