Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16h09
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    28   1.4  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   4.4  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.7  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.7  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    25   7.7  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    25   7.7  
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    25   7.7  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 339  LFNPMTWRLIKSPSIFIEYIKLSSIEYNTEITVCPKMKKPVV 464
            L +P+TW +I S       I LS    N E++   K++KP +
Sbjct: 1079 LVSPLTWTVIDSYEFQQFEIPLSVALVNLEVSETTKLRKPYI 1120


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 177  ITLVDRNNNKTDRRSLNPEQKYYKPGEIETKML 275
            IT+++R +NK   R   P+Q+   P ++E  +L
Sbjct: 2286 ITVLNRVSNKLTGRDFKPQQQLDVPSQVEKLIL 2318


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 336 SLFNPMTWRLIKSPSIFIEYIKLSSIEYNTEIT 434
           +  N  +W +I+ P +F+   +L +I YN + T
Sbjct: 135 NFINAFSWGMIEIPLLFLLRQELCAIHYNLDPT 167


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 126 ANSTESKNHGPESGKVTITLVDRNNNK 206
           A S  S NHG     + + LV R++NK
Sbjct: 28  ALSESSMNHGTPDDSILLDLVSRSDNK 54


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 430 ISVLYSIDESFIYSMKILGDFINL 359
           + VLYSI E+     K+L DF+NL
Sbjct: 144 VYVLYSIAETVDLDNKLLLDFVNL 167


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 455 FFHFWAYRYFSIV-FDRRKFYIFDENTWGF 369
           F+H   Y++  +V       Y FD+N WG+
Sbjct: 292 FYHPQVYKHVGVVPLKAINAYDFDDNIWGY 321


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 279 FQDAGNPPLYVIVEWKYEASLFNPMTWRLIKSPSIFIEYIKLSSI 413
           F+D     + V ++WK E  +FN  T + +   +I +  I  S++
Sbjct: 144 FKDGAFVNVLVAIQWKEEFEIFNNETKKSLPKQTIHVHDISGSAM 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,204
Number of Sequences: 5004
Number of extensions: 61003
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)