Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16h08
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0547 - 17032318-17032392,17032893-17032962,17032979-170331...    29   1.6  
11_04_0163 + 14296868-14297380,14297548-14297622,14298149-14298223     29   2.1  
02_03_0187 - 16166365-16166571,16166665-16166962,16167197-161675...    27   6.5  
04_01_0138 - 1558877-1558981,1559030-1559737                           27   8.6  

>04_03_0547 -
           17032318-17032392,17032893-17032962,17032979-17033103,
           17033196-17033252,17034152-17034217
          Length = 130

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 136 KTIKRNPSDGGHIKRKTK-LLFLFNSEHFHIYLH 38
           K  +R PS GG I    K LL L++ +H H ++H
Sbjct: 89  KDPERKPSLGGDISLPAKILLMLYDQDHTHSFMH 122


>11_04_0163 + 14296868-14297380,14297548-14297622,14298149-14298223
          Length = 220

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 145 NKLKTIKRNPSDGGHIKRKTK-LLFLFNSEHFHIYLH 38
           N +   +R PS GG I   T+ LL L++ +H   Y+H
Sbjct: 176 NNMMDSERKPSLGGEIAPPTEILLMLYDQDHTPTYMH 212


>02_03_0187 -
           16166365-16166571,16166665-16166962,16167197-16167524,
           16167990-16168157,16168803-16168858,16168991-16169076,
           16169846-16169977
          Length = 424

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
 Frame = -2

Query: 420 GHRIQRFSLYFYNESYK*R*IVFVWYDTTRIYMHLRNTLIAISYSNVILHNTVLPNEKLF 241
           G  + R+ LYF  + Y  R    +  DT+ I  H+  TL    +   I H  + P  +  
Sbjct: 335 GFYVMRYMLYFVEDGYNHRNAEKLGLDTSEILPHVFKTL-TDEFCGFIRHYVIDPTGEYN 393

Query: 240 VT-V*KLTYKILADPADIVVPQLISKK 163
           +  V K        P D    +L  +K
Sbjct: 394 INKVPKRVQSSAPPPRDQAATKLAPRK 420


>04_01_0138 - 1558877-1558981,1559030-1559737
          Length = 270

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 170 LIN*GTTMSAGSASILYVNFQTVTNNF 250
           LIN GTT + GS   + V F T  N F
Sbjct: 146 LINNGTTTAFGSDRFIAVEFDTYNNTF 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,631,634
Number of Sequences: 37544
Number of extensions: 211722
Number of successful extensions: 333
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)