Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16h05
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 93 2e-20
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 28 1.4
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 27 1.8
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 27 3.1
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 26 5.5
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.2
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 7.2
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 9.5
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.5
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 25 9.5
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 93.5 bits (222), Expect = 2e-20
Identities = 40/76 (52%), Positives = 55/76 (72%)
Frame = +3
Query: 405 HPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGLRW 584
HP +FF L+FR AI+ YIL +F+ SF+ F+++ LL+ D WTVKN+SGRLLVGLRW
Sbjct: 47 HPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAVDLWTVKNVSGRLLVGLRW 106
Query: 585 WNYVDDNGKSHWVFEA 632
N +G+S W+FE+
Sbjct: 107 RNETGVDGESIWIFES 122
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +3
Query: 399 FVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGL 578
FV+P + F L CS ++ ++L G F F+A + I L + N S R
Sbjct: 358 FVYPLVQEFCLFLACSFVVSFLLHGSF---FLAVLSVDIRRLELQDFLDSNSSNR---NS 411
Query: 579 RWW 587
+WW
Sbjct: 412 KWW 414
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +3
Query: 411 YIVFFHLVFRCSAIIVYILCG-----WFSDSFIASFVLVILLLSADFWTVKNIS 557
Y+ F LV +A++V G W S I V +L+L A +W KNI+
Sbjct: 225 YLGSFLLVTGITALVVTFNMGGDAFPWVSPVIITLLVSSVLILFAFYWVEKNIA 278
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 175 NFQDYLLFLFNSICLTAVEIIHQYLSTY 258
NF+ L F SIC+ + + ++YL+ Y
Sbjct: 63 NFKSLLFLFFVSICVVILVVRYRYLNKY 90
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 456 VYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWV 623
V+I+ G+ F A L LL +F+ G L W +++ +NGK++W+
Sbjct: 30 VWIIYGYSIGGFFAFLSLFHLL---EFYITARFQGSQL---SWDSFILNNGKAYWL 79
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 399 FVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVI 515
F+HP+ +FRC + + L + S SF SF+ +
Sbjct: 101 FLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFL 139
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -3
Query: 530 CRQQ*ND*YEACNE*VGEPPTQDVHNYRRASEHQVEEHYV 411
CR++ Y C++ G P Q NY H ++HY+
Sbjct: 264 CREKHERCY-ICDQVAGRPTHQYFKNYDSLERHFEKDHYI 302
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -1
Query: 550 FLTVQKSADSSRMTNTKLAMNESENHPH 467
FLT+Q+ DS ++T+ L+++ + H H
Sbjct: 369 FLTLQEVFDSLKLTSYDLSIDTLDMHAH 396
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 393 KQFVHPYIVFFHLVFRCSAI 452
K+FV PY + + LVF S+I
Sbjct: 372 KEFVQPYFIIYTLVFFGSSI 391
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 519 LLSADFWTVKNISGRLLVGLRWWNYV 596
L S W KN+ GR+L+ W+N V
Sbjct: 441 LNSLKSWIEKNMGGRILLTGSWYNGV 466
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,425
Number of Sequences: 5004
Number of extensions: 55845
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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