Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16g21
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.66 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   0.87 
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    29   0.87 
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    26   4.6  

>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 161

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 555 SVPRHVNPVVNKATRPSALHVQRVPNLFQYMLDWFITVYIP 433
           S P     V +   R +ALH+  V NL +  +  FI+ Y P
Sbjct: 20  STPLETEVVADTTLRKTALHLAGVDNLSEEQVKGFISAYAP 60


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = -2

Query: 534  PVVNKATRPSALHVQRVPNLFQYMLDWFIT--VYIPIKSGSAQNSRCYNNRHVLLLSSAR 361
            P  +K  R   ++     +  +Y L+ F +  +Y+PI  G    +      H L +SSA+
Sbjct: 3495 PRYSKIVRQLLINTSLKKDTKEYWLNLFRSKNIYVPIFQGKLDMAITLG--HKLSISSAK 3552

Query: 360  RGAVSVTGCFHSIRSSALSLWVLFI 286
               +  +    S+ S+ L+ W+ F+
Sbjct: 3553 LSTICRSVLKASVNSALLTSWICFL 3577


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +1

Query: 127  TNSNIEIQGSITSHI*GQAAITRHL---ISPDKKFVLLVHQTGIGLDTLGLTV 276
            T  ++ I+    S+  GQAA+   +   I P +K + +V +TG G  T+GLT+
Sbjct: 1176 TLGHVSIKNLTVSYSIGQAAVLEDINLEILPKEK-IAIVGRTGSGKSTMGLTL 1227


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -2

Query: 612 APRSAGNDRNFSGRIW*RNSVPRHVNPVVNKATRP 508
           +P+S GN  +FSG+ W R+++P   N VV   T P
Sbjct: 34  SPQSWGN--SFSGQAWLRDTIPSLSN-VVESQTIP 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,889
Number of Sequences: 5004
Number of extensions: 55034
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)