Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16g18
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    30   0.28 
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    29   0.65 
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    29   0.86 
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    28   1.5  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    28   1.5  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   2.0  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.6  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    26   4.6  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    26   6.1  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    25   8.0  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    25   8.0  

>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 138 SGRSHSFHTHHYVSNHSDHFHHIHRGS 218
           +G  H  H HHY++ H    +H H GS
Sbjct: 739 NGGHHHHHHHHYITGHVYGGYHKHSGS 765


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 36  CRSLIHQLYPTTGESVPSRIKIHQAIDHFSDSPPSGRSHSFHTH-HYVSNH 185
           C  ++  LY  +GESV SRI++   +D   D   +  S ++++H   V+ H
Sbjct: 333 CSYILDALYVFSGESVNSRIQVVSDVDDDEDD-ENAFSQNYYSHLQMVAKH 382


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 607 STLIFKCSHNKISNTSLITFW 669
           ST IF CS +KI N  L+ FW
Sbjct: 512 STFIFLCSLSKILNGPLVPFW 532


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +3

Query: 99  IHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGSRYLISHRPDSPTNSSPRCRT 278
           IH      S SP S  S + H + Y+S+    F      S+ + SH P +   +    R 
Sbjct: 93  IHSPTFTLSVSPDSQSSSATHQNDYISSPHADFSFSPPASK-IQSHEPLNDMAAVHPLRP 151

Query: 279 IRISSARS-PEPRLARV 326
             +S   S PEP+ A V
Sbjct: 152 SHVSGPLSPPEPKAASV 168


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = +3

Query: 84  PSRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNH---SDHFHHIHRGSRYLISHR-PDSP 251
           P+ ++ HQ  D  + S      H  +    +S     S H HH    S Y +S   P SP
Sbjct: 81  PAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSSSSYAVSPTSPTSP 140

Query: 252 TNSSP 266
           T+S P
Sbjct: 141 TSSGP 145


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 616 IFKCSHNKISNTSLITFWSLKFSKIMAKH 702
           I K SH+KIS + LIT   + +S++  K+
Sbjct: 18  ISKISHSKISISELITLLDIHYSELFTKN 46


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +3

Query: 84  PSRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHH 203
           P+ +      + FS   P G S+   + H+++N+    HH
Sbjct: 371 PTHVSAATGSNTFSPDFPYGNSYGNGSSHFIANYGGSVHH 410


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 397 IARVLVHIGHVRIRGINGSNLVTETRASRGSGERAELIRIV 275
           ++++   +G V I G+N SN+      S  +G+R + I +V
Sbjct: 159 VSKMHCQLGTVAIAGLNSSNIQRVIYLSEANGKRIDGIALV 199


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 128 FTPIRTKSFFPYTPLRF 178
           F  ++T+ + PYTP+RF
Sbjct: 169 FVNLQTRCYLPYTPVRF 185


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 164 TPLRFEPFRPFPSYPQRFPIFNFPSPGFTDEQFPAMQNYPNQ 289
           +P+ +    P PS+P   PI+N  S G+  +  P M  Y NQ
Sbjct: 451 SPMYYNYNYPQPSFPPFHPIYN-DSIGYYSQANPQMY-YANQ 490


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 117 HFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGS 218
           H   S  S   H+    H+  +H  H HH H  S
Sbjct: 7   HKGGSDDSTHHHTHDYDHHNHDHHGHDHHSHDSS 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,649
Number of Sequences: 5004
Number of extensions: 57938
Number of successful extensions: 178
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)