Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16g17
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    30   0.41 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    29   0.71 
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    28   1.2  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    28   1.6  
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    27   2.2  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   2.9  
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb...    27   3.8  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    26   6.6  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    26   6.6  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    25   8.8  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   8.8  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    25   8.8  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 19  SNSEMLHYRPILIG*LMAV-GDLIITKNKKVTLPNKVRSL 135
           S  ++L Y+ +    L ++ G L    NKKVTLP+KV SL
Sbjct: 820 SGRDILRYKAVTANTLFSIYGFLSAFDNKKVTLPDKVVSL 859


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 289  NEEMQLPFYRGVECYIENIRSSDDFKAWELCGKLNQIPKEF 411
            N+ M LPFYRG   YI+ I ++ D    E C K+  +  EF
Sbjct: 1148 NQNMSLPFYRGE--YIQLIDANQD-NYLEECLKIRSVLAEF 1185


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 289  NEEMQLPFYRGVECYIENIRSSDDFKAWELCGKLNQIPKEF 411
            N+ + LPFYRG   YI+ I ++ D    E C K+  I  EF
Sbjct: 1124 NQNLSLPFYRGE--YIQLIDANQD-NYLEECLKIRSILAEF 1161


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = -1

Query: 573 IIAHHLLPSLNGHFV--ILYVISNSKAKSHKFSF----WRAKTSNLTLVECYFLIVNSVS 412
           ++ HH   S   + +  +L+V S  K  ++KF F    W   T  L + + +F+I N   
Sbjct: 145 LVLHHRFISFMLYIIGFVLFVASLKKG-NYKFQFSQFCWTHMTLLLVVGQSHFMINNLFE 203

Query: 411 KLLWYLI 391
            L W+ +
Sbjct: 204 GLFWFFV 210


>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 723 NVASIDLYVMWKSYNLVITDTL 658
           ++AS DL  +W +YN+V+ +TL
Sbjct: 196 HIASSDLDELWDTYNMVLYETL 217


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = +1

Query: 112 LPNKVRSLGECLTNYLGLQQNTIDEKLDIVQSTERPLSVKIKDSLARNIAF--LHHLSEV 285
           L +K++SL E +++   L     D    I +  E  L ++  D   + + +  L H ++ 
Sbjct: 425 LESKIKSLHESVSS---LDTERADLLAKINEKIES-LELEKHDQQKKRLTYSELFHKTQE 480

Query: 286 INEEMQLPFYRGVECYIENIRSSDDFKAWELCGKLNQIPKEFRNAI 423
           +NEE+Q    + +E   +   S  D K  E    L +I  E +  I
Sbjct: 481 LNEELQSCLQKILEASADRNESKQDAKKREALYALKRIYPEVKGRI 526


>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 253 NIAFLHHLSEVINEEMQLPFYRGVECYIENIR 348
           NIA L   ++   + M+ P +R V+ +++N+R
Sbjct: 265 NIADLRDRAQKAKDGMEAPLFRRVQLFMDNVR 296


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 208 YFEQYQAFRQWCFVVDPGNWSNILPEISL 122
           YF Q+     W +VVDP     I+P  S+
Sbjct: 475 YFTQHHKTAWWIYVVDPRQNRVIVPPFSI 503


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 124 VRSLGECLTNYLGLQQNTIDEKLDIVQSTERPLSV--KIKDSLARNIAFLHHLS 279
           V+  G C   +LG   N I E  D ++    P     +IK    RNIAF+H L+
Sbjct: 199 VQQSGACRNVFLGNLPNGITE--DEIREDLEPFGPIDQIKIVTERNIAFVHFLN 250


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +2

Query: 374 NYVEN*IKYQRSLETLLTIKK*HSTNVRFDVFALQNENLWDLAFEFDMTY 523
           NYVEN       +  L   +K  S NV FDV+A Q  +  +LA     TY
Sbjct: 209 NYVEN-----ECIHILKLTEKYSSQNVPFDVYAAQIPHHSNLASVLATTY 253


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +1

Query: 124 VRSLGECLTNYLGLQQNTIDEKLDIVQST 210
           VRSL EC+T Y   Q +T++++ ++VQ T
Sbjct: 596 VRSLEECITLYNNGQISTLNDE-EVVQLT 623


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
 Frame = -1

Query: 735 LHNKNVASIDLYVM--WKSYNLVITDTLKEAILCAI*CFQIIFNEK*SILLSTNFYIIAH 562
           +H K + +IDLY++     +NL +        L  +  F        S  L +N Y   H
Sbjct: 79  IHRKRIGAIDLYILDFATQHNLYVASLRNMGFLSLV--FHTKETNSKSSTLHSNPYCPEH 136

Query: 561 HLLPSLNGHFVILYVISN-SKAKSHK 487
           H + +L     +    SN S + SH+
Sbjct: 137 HSIRTLPS--AVTATTSNISTSSSHR 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,422
Number of Sequences: 5004
Number of extensions: 65598
Number of successful extensions: 170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)