Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16g10
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 27 2.9
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 26 5.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.1
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 26 5.1
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.7
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 6.7
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 25 6.7
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 25 8.8
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 8.8
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 26.6 bits (56), Expect = 2.9
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -3
Query: 553 LFLNIVFNIAVSMTNIDYCLFREINSSRVFNDETRSLVKRIFITDTATVDIVQPESARF- 377
LF ++F+I ++ DY + IN S V T + ++ F+ T D V+ S F
Sbjct: 417 LFHFLLFDIGSGLSGSDYTYEQYINHSAVAFSFTEEIFEKNFV--TVLPDFVKLFSISFG 474
Query: 376 YW 371
YW
Sbjct: 475 YW 476
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 349 NSSNKREANRTGLILVVRCLQSPCL 423
NSS+ E ++ L+ V +C+Q P L
Sbjct: 77 NSSHSSELSKANLVDVEKCIQDPLL 101
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 5.1
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +1
Query: 241 SATSTKRSPRQEVNSRDAVSRQMCPLPAPRGAGTQFNSSNKREANRTGLILV 396
+ATST +P VNS A S PL T NS+ A+ T L V
Sbjct: 334 TATSTSSTPLSSVNSTTATSASSTPL-------TSVNSTTATSASSTPLTSV 378
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 241 SATSTKRSPRQEVNSRDAVSRQMCPLPAPRG-AGTQFNSSNKREANRT 381
+ATS +P VNS A S PL + + T +S+ AN T
Sbjct: 350 TATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANST 397
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 241 SATSTKRSPRQEVNSRDAVSRQMCPLPAPRG-AGTQFNSSNKREANRT 381
+ATS +P VNS A S PL + + T +S+ AN T
Sbjct: 464 TATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANST 511
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 405 STVAVSVMNIRFTRDRVSSLK 467
S +AVS NI++ R+R+ +LK
Sbjct: 43 SNIAVSENNIKYLRERIDALK 63
>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +2
Query: 251 RPNAPRGRKSTAEMLSAVRCALSQLQGEPEPNLIVPTNEKPI 376
R N R K E+L A+ C L + E +P+N I
Sbjct: 116 RHNTERAIKELQEILHAIVCLLHSIMQEESEKEEIPSNASSI 157
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 469 VFNDETRSLVKRIFITDTATVDIVQPE 389
VFNDE + + RIF D + I PE
Sbjct: 414 VFNDEFQLVAYRIFYADAISKSIDYPE 440
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 508 IDYCLFREINSSRVFNDETRSLVKRIFITDTATVDIVQPESARFYWL 368
I Y L ++ + V + +T+ L++ I D + +PE R WL
Sbjct: 208 ISYLLRKDNATVTVCHSKTKDLIQHISNADLVIAALGKPEFVRGEWL 254
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 53 NHDRPSVWSRAGGVLNKWLWGLFC 124
N D PS+ + + N+ LW +FC
Sbjct: 381 NSDDPSLTQNSKELRNRLLWSVFC 404
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 130 SAAKQAPQPFIEDATSPRPDARPIV 56
SA+++A QP + + P+P A P+V
Sbjct: 499 SASQKAAQPSVITPSVPQPPAAPVV 523
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,428
Number of Sequences: 5004
Number of extensions: 50065
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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