Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16g10
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 31 0.97
12_02_0542 - 20166044-20166111,20166399-20166526,20166613-201666... 29 3.0
02_05_0846 + 32173853-32173931,32174047-32174118,32174221-321744... 29 3.0
12_02_0197 + 15392427-15392617,15392743-15393271 28 5.2
09_04_0041 - 14051870-14052430,14052509-14052562 28 5.2
02_04_0028 + 19027510-19027983,19028087-19028278,19028369-190285... 28 5.2
01_02_0075 + 10873789-10873871,10873883-10874420 28 5.2
12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356 28 6.9
10_08_0727 - 20133293-20135701 28 6.9
06_03_0516 + 21661696-21662490 28 6.9
04_04_0404 - 24952444-24953094 28 6.9
03_05_0195 - 21822418-21822441,21822480-21822659,21823337-218234... 28 6.9
02_04_0001 - 18816492-18816741,18816881-18817050,18817244-188173... 28 6.9
06_01_0783 + 5857950-5857979,5859474-5860424 27 9.1
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 27 9.1
03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401 27 9.1
>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 30.7 bits (66), Expect = 0.97
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 205 PRRVSVGPVLGPLVARTEVAGHAGGSAAKQAPQPFIE 95
PR + P P A + A A G + + PQPF+E
Sbjct: 1948 PRHATPAPASAPAAAMADPASPATGELSPRTPQPFME 1984
>12_02_0542 -
20166044-20166111,20166399-20166526,20166613-20166686,
20166934-20166995,20167903-20168098,20168106-20169086
Length = 502
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 184 PVLGPLVARTEVAGHAGGSAAKQAPQPFIEDATSPRPDARPIVVV 50
P++ P+ ART G A AA A +D + P +VVV
Sbjct: 145 PLVAPVAARTPRRGEARSQAADTAATSVTDDGEAAAPADEEVVVV 189
>02_05_0846 +
32173853-32173931,32174047-32174118,32174221-32174430,
32174545-32174636
Length = 150
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +2
Query: 80 RAGGVLNKWLWGLF-CCGPPGVACYFCAC 163
R GG L +W GLF C PG C C
Sbjct: 5 RTGGGLTRWSTGLFHCMDDPGNCLITCVC 33
>12_02_0197 + 15392427-15392617,15392743-15393271
Length = 239
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = +2
Query: 86 GGVLNKWLW--GLFCCGPPGVAC 148
GGV + WLW G CCG G C
Sbjct: 64 GGVTSGWLWRRGCGCCGYGGGGC 86
>09_04_0041 - 14051870-14052430,14052509-14052562
Length = 204
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 139 AGGSAAKQAPQPFIEDATSPRPDARP 62
A +AA AP P A+SPRP RP
Sbjct: 101 AAAAAAAPAPAPAAPAASSPRPRGRP 126
>02_04_0028 +
19027510-19027983,19028087-19028278,19028369-19028545,
19029568-19029663,19030487-19030618,19030950-19031008,
19031234-19031321,19031433-19031693
Length = 492
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -3
Query: 193 SVGPVLGPLVARTEVAGHAGGSAAKQAPQPFIEDATSPRPDARPIVVVNE 44
S P A T A GGSAA + P+P PRP P+ + E
Sbjct: 68 SAATAAAPGGASTAAAAQGGGSAASRPPRP-PRPPLPPRPPRPPLPPLRE 116
>01_02_0075 + 10873789-10873871,10873883-10874420
Length = 206
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = -3
Query: 313 GTSDG*QHLCC*LPASGSVWSMLPR*TLSRGGGLMDPRRVSVGPVLGPLVARTEVAGHAG 134
G DG + + A+GS P L+ GGG+++ G L P+V A AG
Sbjct: 7 GGGDGGRRRLSGVEAAGSDGWRRPLPDLAGGGGVVEEEATGGGEALDPMVGGAVEAAAAG 66
Query: 133 GS 128
S
Sbjct: 67 SS 68
>12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356
Length = 480
Score = 27.9 bits (59), Expect = 6.9
Identities = 21/76 (27%), Positives = 30/76 (39%)
Frame = +2
Query: 158 ACYERPEXXXXXXXXXIHQATATTERLSRQHRPNAPRGRKSTAEMLSAVRCALSQLQGEP 337
ACY RP A A ER SR+ PR RK+ A A+++L+
Sbjct: 30 ACYHRPSAGSCHHACKYGGAHAFEERESRRPAAAQPRPRKTPPPPPLAAATAMAKLRSAS 89
Query: 338 EPNLIVPTNEKPIEPG 385
+ KP++ G
Sbjct: 90 SRRRVGDLT-KPVKAG 104
>10_08_0727 - 20133293-20135701
Length = 802
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -2
Query: 407 RHRTTRISPVLLASRLLELLNWVPAPLGA 321
R + PVLL LL LLNW AP+GA
Sbjct: 6 RAAAAAVLPVLLPLLLL-LLNWAAAPVGA 33
>06_03_0516 + 21661696-21662490
Length = 264
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 281 LTSCLGERLVDVAEINAQSWRWLDGSSSCLC 189
+T+C GE D+ E +SW+ G++ C C
Sbjct: 222 VTNCYGELYGDMMEYCGRSWKPGTGTAPCWC 252
>04_04_0404 - 24952444-24953094
Length = 216
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 208 DPR-RVSVGPVLGPLVARTEVAGHAG 134
DPR RV +G L P+V TEVA H G
Sbjct: 99 DPRERVEIGGRLFPVVDETEVALHGG 124
>03_05_0195 -
21822418-21822441,21822480-21822659,21823337-21823453,
21824347-21824412,21825592-21825683,21825924-21825987,
21826098-21826176,21826248-21826387,21827253-21827334,
21827565-21827572,21828005-21828103,21828208-21828285,
21828379-21828472,21828726-21828823,21830299-21830502
Length = 474
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/68 (23%), Positives = 27/68 (39%)
Frame = +3
Query: 144 PATSVRAXXXXXXXXXXXXXXSIKPPPRLSVYLGNIDQTLPEAGSQQQRCCQPSDVPSPS 323
P+TS A S++ P + + ++ LP S ++ CC P P
Sbjct: 4 PSTSTAALLLASGRHPRQQFQSLRAPTKPPFHFPHL--LLPSRSSSRRCCCVPVPAPGAR 61
Query: 324 SKGSRNPI 347
S+G P+
Sbjct: 62 SRGLPAPV 69
>02_04_0001 -
18816492-18816741,18816881-18817050,18817244-18817388,
18817495-18817565,18817910-18817993,18818103-18818222,
18818310-18818480,18818955-18819044,18821893-18821985,
18822073-18822405
Length = 508
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = -3
Query: 205 PRRVSVGPVLGPLVARTEVAGHAGGSAAKQAPQPFIEDATSPRPDARP 62
P + GPV GP + + A A A+ AP D + P P P
Sbjct: 7 PAKDQEGPVHGPQESTSSAAAAAAADASIPAPPEGAGDVSPPSPPPPP 54
>06_01_0783 + 5857950-5857979,5859474-5860424
Length = 326
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -3
Query: 265 GSVWSMLPR*TLSRGGGLMDPRRVS 191
GSV S PR +SRGGG+ PRR S
Sbjct: 135 GSVASS-PRSPMSRGGGMWSPRRRS 158
>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
Length = 585
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = -3
Query: 223 GGGLMDPRRVSVGPVLGPLVARTEVAGHAGGSAAKQAPQPFIED---ATSPRPDARP 62
G G P + P P + + GG+AA AP P + A+ PRP +P
Sbjct: 228 GSGQQQPSTILAPPPPTPTRQKQQGIVFGGGAAAGVAPPPSLRGMPMASGPRPARQP 284
>03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401
Length = 500
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 249 IDQTLPEAGSQQQRCCQPSDVPSPSSKGSRN 341
+D+ LPE Q++ C D P S +RN
Sbjct: 279 VDEALPEGTVQERNQCSDDDDELPESPAARN 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,394,395
Number of Sequences: 37544
Number of extensions: 397398
Number of successful extensions: 1313
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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