Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16g09
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0361 + 28733493-28733523,28733743-28733870,28733982-287340... 34 0.093
06_03_0876 - 25593744-25594046,25594747-25594902,25594986-255950... 32 0.50
12_01_0640 - 5391407-5391523,5391659-5391748,5391837-5391901,539... 31 1.1
02_05_0055 + 25453699-25453830,25454157-25454269,25454686-254549... 30 1.5
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 29 2.6
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 29 3.5
01_06_0236 - 27751430-27751600,27752029-27752278,27753131-27754050 29 3.5
07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392 28 6.1
11_04_0224 + 15059904-15059910,15059955-15060185,15060345-150604... 28 8.1
07_03_0466 + 18474929-18475315,18476035-18476298,18476717-184767... 28 8.1
06_03_1027 + 27000498-27000503,27001325-27002271,27002359-27002698 28 8.1
01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115... 28 8.1
>01_06_0361 +
28733493-28733523,28733743-28733870,28733982-28734044,
28735074-28735211,28735357-28735494,28735700-28735843,
28736065-28736175,28736260-28736401,28736469-28736779,
28737057-28737218,28737313-28737366,28737472-28737546,
28737636-28737731
Length = 530
Score = 34.3 bits (75), Expect = 0.093
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +2
Query: 503 LDKAIVGEGVQYEKMIMDEENFELPDDSVDLLVSSLTFHWVNDLPGLFDRIMKCLKPDGV 682
L++AI G E + D PD++ D++ S T + D P LF K LKP G
Sbjct: 362 LERAI-GRKCSVEFEVADCTKKTYPDNTFDVIYSRDTILHIQDKPSLFKSFFKWLKPGGK 420
Query: 683 LL 688
+L
Sbjct: 421 VL 422
>06_03_0876 -
25593744-25594046,25594747-25594902,25594986-25595095,
25595429-25595520,25595613-25595657,25595775-25595920,
25596027-25596114,25596251-25596281,25596388-25596413,
25596617-25596939
Length = 439
Score = 31.9 bits (69), Expect = 0.50
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Frame = -3
Query: 518 LLPYRDEFWMCHT-----VSPS--PRCPAGNAVIHPREAPSSTAFLNVLLMSNILSA 369
+LP +E CH PS P P G AVI P + + N+LLMS ++S+
Sbjct: 289 MLPEEEEMTACHRQRSIWARPSLAPAMPDGGAVIRPDQHQHHPSSRNMLLMSQVISS 345
>12_01_0640 -
5391407-5391523,5391659-5391748,5391837-5391901,
5392201-5392288,5392511-5392589,5393232-5393370,
5393530-5393863
Length = 303
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +1
Query: 262 MNIFDRKTKMIQRERAACNDEYHLSEYVKEEIGWRTADKIFDIKRTFKNAVELGASRGCI 441
+ IFDR K R+RAA ++ + + + D++ D ++ F +A+ LG S G +
Sbjct: 47 VKIFDRDLKRRHRDRAAW--AMGETDALADAVADNLLDRLEDCRKAFPSALCLGGSAGAV 104
Query: 442 TAFPAGQRG 468
G+ G
Sbjct: 105 RRSLRGRGG 113
>02_05_0055 +
25453699-25453830,25454157-25454269,25454686-25454942,
25455480-25456297
Length = 439
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/79 (20%), Positives = 32/79 (40%)
Frame = -3
Query: 554 PLSSFHIERPHQLLPYRDEFWMCHTVSPSPRCPAGNAVIHPREAPSSTAFLNVLLMSNIL 375
PL H E ++L R+ H + P+ N +I P + P + + V + +
Sbjct: 303 PLKKGHTENFGEVLERRNPLAFGHFANHPPKGSTPNVMICPYDFPLTEKDMRVYIPNITF 362
Query: 374 SAVRQPISSLTYSDKWYSS 318
+P++ + W+ S
Sbjct: 363 GGEEEPVTMKRFGSFWFKS 381
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 232 QKTASSIYRTMNIFDRKTKMIQRERAACND--EYHLSEYVKEEIG 360
+K SSI+ N+F RK K+++ + E H +Y KE+IG
Sbjct: 198 EKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH-GDYAKEDIG 241
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 572 IQNFPHPLSSFHIERPHQLLPYRDEFWMCHTVSPSP 465
+QNF +++ + P LLP + + CH VS P
Sbjct: 343 VQNFQGNINNAQVHTPQTLLPQYNVYPQCHGVSMMP 378
>01_06_0236 - 27751430-27751600,27752029-27752278,27753131-27754050
Length = 446
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = -3
Query: 494 WMCHTVSPSPRCPAGNAVIHPREAPSSTAFLNVLLMSNILSAVRQPISSLTYSDKWYSSL 315
W SPSP+ + + R +S A L+++LMS+ L + ISS ++ S
Sbjct: 18 WEEFDPSPSPKLAYSQSYVAMRGLLTSVASLDLVLMSSSLKSAWAAISSHKHARSLERSR 77
Query: 314 QAALS-----LCIILVFLSNIFI 261
+S L +++ F+ IFI
Sbjct: 78 SKGMSLKRAMLQLLVCFMVGIFI 100
>07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392
Length = 313
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = -3
Query: 500 EFWMCHTVSPSPRCPAGNAVIHPREAPSSTAFLNVLLMSNILSAVRQPISSLTYSDKWYS 321
E + H P +CP PR+ S+ F N+L S + SS T S W S
Sbjct: 147 EHCLKHRFGPDHKCPG------PRKPESTFPFGNMLRRSQKAESCSNSNSSSTSSSWWSS 200
Query: 320 SLQAA 306
SL A
Sbjct: 201 SLLTA 205
>11_04_0224 +
15059904-15059910,15059955-15060185,15060345-15060424,
15060497-15060547,15060548-15060670,15062151-15062184,
15062363-15062441,15062779-15062848,15075787-15075889,
15076247-15076284,15076449-15076550,15077027-15077107,
15077506-15077657,15077731-15077857,15078193-15078311,
15078636-15078749,15079001-15079214
Length = 574
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = -2
Query: 261 RSVYRTCSLLFCCIRTILNDVSYICLYIFCIRSQ 160
RS+Y C+ +CC +N+ + + L+ + ++S+
Sbjct: 18 RSIYIMCAQYYCCRYVEVNESTSVRLFYYFVKSE 51
>07_03_0466 +
18474929-18475315,18476035-18476298,18476717-18476755,
18476756-18476878,18477118-18477240
Length = 311
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 602 KPADQRCRLVIQNFPHPLSSFHIERPHQLLPYR 504
K A++ C LV+ + P + + ER H+L +R
Sbjct: 38 KKANRSCSLVVASSPRSILELYEERAHELRDFR 70
>06_03_1027 + 27000498-27000503,27001325-27002271,27002359-27002698
Length = 430
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 473 PSPRCPAGNAVIHPREAPSSTAFLNVLLMSNILSAVRQPISSLTYSDKW 327
P+P N+VIHP A + T LN ++ +L P L+ ++W
Sbjct: 96 PAPSYSVHNSVIHPNRAMAPT--LNEDALARVLMDPSHPTEILSNYEEW 142
>01_06_1097 +
34507376-34507395,34509380-34511214,34511263-34511598,
34511800-34513691
Length = 1360
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 551 LSSFHIERPHQLLPYRDEFWMCHTVSPSPRCPAGNAVIHPREAP 420
LS FH++ PH +P R+ F + + + + +V+H R+ P
Sbjct: 497 LSRFHVQVPHISVPRRNPFDLPYDSEEAAIPGSAPSVLHTRKNP 540
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,265,932
Number of Sequences: 37544
Number of extensions: 317406
Number of successful extensions: 930
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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