Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16g09
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.90 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.8  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   6.4  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -3

Query: 365 RQPISSLTYSDKW--YSSLQAALSLCIILVFL-SNIF 264
           R P   L Y+  +  YSSL +    CII+VFL  NIF
Sbjct: 331 RTPDQCLFYNTDFIIYSSLSSFYIPCIIMVFLYYNIF 367


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +3

Query: 93  WEKSNKANKNALLTVSKFTSFFIGIECKKYTGRY 194
           W +  +  K   + +  F S+ IG+ C    G Y
Sbjct: 407 WPRLLRKRKELFIAIVCFVSYLIGLFCITEGGMY 440


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +3

Query: 93  WEKSNKANKNALLTVSKFTSFFIGIECKKYTGRY 194
           W +  +  K   + +  F S+ IG+ C    G Y
Sbjct: 460 WPRLLRKRKELFIAIVCFVSYLIGLFCITEGGMY 493


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 482 TVSPSPRCPAGNAVIHP 432
           TV+PS R  A  A+ HP
Sbjct: 152 TVNPSKRITASEALKHP 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,515
Number of Sequences: 438
Number of extensions: 3690
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)