Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16g05
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    26   0.38 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.6  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    23   3.6  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   6.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.3  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 84  FEKPLPHLSLPDWDARLYG 140
           FE+PLP L LP  D  L+G
Sbjct: 471 FEEPLPSLPLPGADDDLFG 489


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 477 ELKKELCVTESNKKMLIDRCQSAWEKINK 563
           E+   LC+TE   K+     +  W+K NK
Sbjct: 302 EIAHALCLTERQIKIWFQNRRMKWKKENK 330


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 477 ELKKELCVTESNKKMLIDRCQSAWEKINKL 566
           E+   LC+TE   K+     +  W+K +K+
Sbjct: 40  EIAHALCLTERQIKIWFQNRRMKWKKEHKM 69


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 477 ELKKELCVTESNKKMLIDRCQSAWEKIN 560
           E+   LC+TE   K+     +  W+K N
Sbjct: 40  EIAHALCLTERQIKIWFQNRRMKWKKEN 67


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 347 QTSHFAVNAVKQFLERGLPLFNFVNPCT*SVIVV 246
           +T+ FAV  +   LER + L      C   V++V
Sbjct: 246 KTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIV 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,816
Number of Sequences: 438
Number of extensions: 3661
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)