Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16g02
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.88 
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.0  
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    27   3.6  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   6.2  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    25   8.2  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   8.2  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    25   8.2  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 97  FVLFIAAAVSADDEPVLARLLVSKQVLNK 183
           F+LFI+ A+S    PVLAR+L    +L+K
Sbjct: 159 FLLFISTAMSITAFPVLARILSELHLLHK 187


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 230 LNNVYFTSISIFSTKYLFSTCF 165
           LN+  FTS+S+ S+KY F T F
Sbjct: 156 LNDACFTSLSMKSSKYSFLTAF 177


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 226 FNVGSAPAVEVKLVDNGFHPDV 291
           FNVG +  V V L D  FH DV
Sbjct: 86  FNVGISVIVRVTLKDGSFHEDV 107


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 358  HVVTVRSNKYGYFNFS-SAEVTYKASEDATDVQYSISSAPGEGAIVAF-KDYDRKFSSHI 531
            H   +R ++   FN++     TY ASE+  +++Y      G G  + F     ++F+ + 
Sbjct: 1274 HRQKIRISRKKIFNYALHLLATYAASENILEIEYEDEVGSGLGPTLEFYTSVSKEFTLNS 1333

Query: 532  LD 537
            LD
Sbjct: 1334 LD 1335


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 670 LHYNKNLTSVPFWVLKASHICSLMSTKGQMEWLGTGGS*LRMP 542
           L YN+ L S+ FW+L       +    G   +LG  G   R+P
Sbjct: 409 LMYNETLASIQFWIL----FIGVNIVFGPQHFLGLNGMPRRIP 447


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 374 GPISTAISTSARRKSHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIESSPRTSSI 538
           G +ST  S++A++    KP K+   +   ++  +E E    SK+ +     TS I
Sbjct: 257 GSLSTNTSSTAQKNKSRKPTKSFSDAVAAASRAKELEKEKLSKVTVTPDDSTSII 311


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 392 ISTSARRKSHTKPAKTPQTSNIRSAVLQEREPS*PSKI 505
           +    +RK  TK     +  +I SAVL E +P   SK+
Sbjct: 132 VGKEVQRKLRTKQLDLSKAESIISAVLGEEKPDPSSKV 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,674
Number of Sequences: 5004
Number of extensions: 56203
Number of successful extensions: 233
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)