Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16g01
(667 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 97 2e-21
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 93 4e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 56 3e-09
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 56 6e-09
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 26 5.6
SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac... 25 9.8
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 9.8
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.8
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 97.1 bits (231), Expect = 2e-21
Identities = 43/75 (57%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Frame = +3
Query: 72 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL----AFPDNDNSCGHFFSETGAGK 239
M+EI+ IH+GQAG Q NACWELYCLEHGI+P+G + A ++D FFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 240 FVPRVVMIDLEPTPI 284
+VPR + +DLEP I
Sbjct: 61 YVPRSIYVDLEPNVI 75
Score = 67.3 bits (157), Expect = 2e-12
Identities = 27/48 (56%), Positives = 39/48 (81%)
Frame = +1
Query: 523 DEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIR 666
D++RTG YR LFH LITGKEDA++N+ARG++ VG+E++D ++IR
Sbjct: 76 DQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIR 123
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 92.7 bits (220), Expect = 4e-20
Identities = 44/79 (55%), Positives = 54/79 (68%), Gaps = 8/79 (10%)
Frame = +3
Query: 72 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGV-----LAFPDN---DNSCGHFFSET 227
M+E++ +H+GQAGVQ NACWELYCLEHGI PDG +N ++ G FFSET
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 228 GAGKFVPRVVMIDLEPTPI 284
G GKFVPR + +DLEP I
Sbjct: 61 GQGKFVPRSIYVDLEPNVI 79
Score = 69.3 bits (162), Expect = 5e-13
Identities = 27/48 (56%), Positives = 39/48 (81%)
Frame = +1
Query: 523 DEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIR 666
D++RTG Y+ LFH ++TGKEDA++N+ARG++ VG+EM+D L RIR
Sbjct: 80 DQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIR 127
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 56.4 bits (130), Expect = 3e-09
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = +3
Query: 75 KEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL-AF-PDNDNSCGHFFSETGAGKFVP 248
+EI+ + GQ G Q + W+ CLEHGI PDG L +F + + FF ++ +++P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 249 RVVMIDLEP 275
R ++IDLEP
Sbjct: 63 RAILIDLEP 71
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 55.6 bits (128), Expect = 6e-09
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 72 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL--AFPDNDNSCGHFFSETGAGKFV 245
M+EI+HI GQ G Q A W EHG+ G+ +F+E GK+V
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 246 PRVVMIDLEP 275
PR V++DLEP
Sbjct: 61 PRAVLVDLEP 70
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 91 YTLDKPVCKPLTPVGNCIVLNT 156
Y LD + + +TP CIVLNT
Sbjct: 96 YNLDTAIKEVVTPGHTCIVLNT 117
>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/46 (23%), Positives = 19/46 (41%)
Frame = +1
Query: 520 SDEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALN 657
S +T V+R+ F S ++ E GY +E ++ N
Sbjct: 207 SKRSKTSVFREAFTDSRVLAASESTLQKLCMGYSKEAKENYQISPN 252
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 111 HRLVQCVCVEFLSFSINHCKFW 46
H+++QC V FLSF I+ C W
Sbjct: 958 HQVLQCKDVSFLSF-ISDCLKW 978
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 9.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 137 FPTGVSGLHTGLSNVYV*NFFHFQLITVNFGFYHILFNLQSN 12
FP + L++G Y NFF L + G+YH L N SN
Sbjct: 249 FPKKIRLLYSGN---YQGNFFPLFLSILCVGYYHHLLNNPSN 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,727
Number of Sequences: 5004
Number of extensions: 55106
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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