Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16f20
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    30   0.31 
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    29   0.41 
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    29   0.72 
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    27   2.2  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    27   2.9  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   8.8  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    25   8.8  

>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +1

Query: 25  DGNMYAVFCLILISNYAFVQGEFVFKKKCRD--VDTSLCTVHNVMVEPCGEGPIFCALKK 198
           D + Y   C + +   A   GE   +   RD  V ++    H ++ +P   GP+ C L+K
Sbjct: 91  DCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVSSNSSLGHPILADPKSRGPLICKLRK 150

Query: 199 NKPYSI 216
            +  S+
Sbjct: 151 EQEISL 156


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 286 QNTFSTTFTRSAEYNDLLDNTLSEGKRTHIQLQLAVDKRASG 411
           +  +  +   +++ NDL D+  SEG+ TH+  Q A +  A G
Sbjct: 32  EKLYGPSVQENSKKNDLSDSADSEGESTHVDEQQAANGAADG 73


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 383 WSCMCVRFPSDKVLSSRSLY 324
           W C C++ PSD  L  R LY
Sbjct: 331 WRCACIKKPSDSDLIERDLY 350


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = +1

Query: 184 CALKKNKPYSISLDVTPHFSANKLHAVIKGDVQNQNTFSTTFTRSAEYNDLLDNTLSEGK 363
           CA KK   +  SL  +P+ +  +L +    +  ++   STT  R   +   L   +  GK
Sbjct: 237 CASKKETLHIFSLHGSPN-TIRQLTSEEPYEEASEFKSSTTEPRQTHWKRKLLKLIDSGK 295

Query: 364 RTHIQLQL 387
           R H ++QL
Sbjct: 296 RAHWRIQL 303


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 305 PSRDQQSTMTYWTILYRKGSEHTYNSSWLW 394
           P+RD    M  W I Y   S H Y+  W W
Sbjct: 502 PARDLGPRMFAWWIGYGPHSFHLYHWWWTW 531


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 534 LLHDNIFSQELHNLSDFNRKY*ATNMRRIILV 439
           +L   + S  LHN S+   KY A  +R++ L+
Sbjct: 873 ILESRLLSNPLHNFSELEEKY-AEYLRKLALL 903


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 5   FSSTTAPTETCTPYFVLF*FRITLLFRASLYSRKNVEMWTLHCV 136
           FS     ++T TP   +  +    +    LYS KNV+MW + CV
Sbjct: 241 FSKVVWNSKTATPCGTVG-YAAPEIVNDELYS-KNVDMWAMGCV 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,785
Number of Sequences: 5004
Number of extensions: 51032
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)