Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16f20
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1061 + 27282979-27286854                                         29   3.0  
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351...    29   3.9  
03_05_0985 - 29424698-29425183                                         28   6.9  
02_04_0485 + 23338980-23339187,23339277-23339305,23339962-233400...    28   6.9  
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001     28   6.9  

>06_03_1061 + 27282979-27286854
          Length = 1291

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 337 LDNTLSEGKRTHIQLQLAVDKRASGKFPLEVRVWDEDDTSH 459
           LD  +S     H+Q ++ V  R +  FP E +++  D++++
Sbjct: 182 LDKLVSMASLGHVQPEVVVSLRQTSSFPTETKLFGRDESTN 222


>01_05_0652 -
           23934604-23934636,23934783-23934893,23935000-23935188,
           23935893-23936012,23936109-23936273,23936638-23936790,
           23936867-23936976,23937280-23937397,23938197-23938427,
           23938984-23939175,23939661-23939945,23940637-23940686,
           23940846-23940921,23941048-23941135,23941689-23941771,
           23941883-23942248,23942462-23942476,23942909-23943018,
           23943134-23943231,23943961-23944019
          Length = 883

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 367 THIQLQLAVDKRASGKFPLEVRVWDEDDTSH 459
           T ++   ++ + A+  F   VRVWD D+TS+
Sbjct: 651 TDVRFSPSMSRLATSSFDKTVRVWDADNTSY 681


>03_05_0985 - 29424698-29425183
          Length = 161

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 269 RETSKTKTLSRLPSRDQQSTMTYWTILYR 355
           +E SK +   +LP   +Q  +T+W + YR
Sbjct: 41  KELSKKRKKGKLPKEARQKLLTWWELHYR 69


>02_04_0485 +
           23338980-23339187,23339277-23339305,23339962-23340064,
           23340311-23340482,23340880-23340940,23341257-23341389,
           23341938-23342208,23342595-23342734,23342912-23342998,
           23343078-23343586,23343671-23344488,23344522-23344720,
           23345552-23345696,23345728-23345782,23347652-23347778,
           23347867-23347936,23348448-23348553,23348636-23348747,
           23349243-23349365,23349468-23349627,23349751-23349827,
           23349925-23349977,23350151-23350205,23350500-23351174
          Length = 1495

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +2

Query: 311 RDQQSTMTYWTILYRK-GSEHTYNSSWLWTNAPLANSHWKFAFGTRMIRLMFVAQYLRLK 487
           RDQ S       + R+  S+HT +    W    L N    F   T ++R MFV ++LR K
Sbjct: 281 RDQHSVERLAEEMLRQLASQHTSDEEAYWILWTLFNQ--SFMHKT-VLRAMFVDKFLRWK 337

Query: 488 SDKLC 502
           +  LC
Sbjct: 338 TFPLC 342


>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
          Length = 1472

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 204 LILLESAEDRAFATRFNHHVMNGTQ 130
           ++ LE+ ED  F   F HH  +GT+
Sbjct: 532 VVRLENMEDTEFLALFKHHAFSGTE 556


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,861,940
Number of Sequences: 37544
Number of extensions: 312434
Number of successful extensions: 746
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)