Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16f20
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022984-2|AAB69952.1|  521|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AF022984-2|AAB69952.1|  521|Caenorhabditis elegans Hypothetical
           protein ZK488.5 protein.
          Length = 521

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/44 (22%), Positives = 25/44 (56%)
 Frame = +2

Query: 365 EHTYNSSWLWTNAPLANSHWKFAFGTRMIRLMFVAQYLRLKSDK 496
           +H + + ++W N  + + H +  + ++   L+ + + L +KSDK
Sbjct: 298 DHFWRADYMWHNGQINDCHHRNRYFSKWTALIDIDERLEMKSDK 341


>Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical
           protein F57G4.1 protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 31  NMYAVFCLILISN-YAFVQGEFVFKKKCRDVDTSLCT 138
           N+  +F L  + N +  V+ E  F   C DVDT+LCT
Sbjct: 460 NIEGLFELDHVENQFLTVENEVSFGFDCCDVDTNLCT 496


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,365,985
Number of Sequences: 27780
Number of extensions: 289286
Number of successful extensions: 868
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)