Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16f20
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    25   0.79 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   7.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.7  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 226 VTPHFSANKLHAVIKGDVQNQNTFSTTFTRSA 321
           VTP    N L   ++G   N+  F+TTF  +A
Sbjct: 47  VTPPQGENMLDMDLRGIYSNRTDFTTTFRPTA 78


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 397 KRASGKFPLEVRVWDEDDTS 456
           K  SG+ PLE   W+ ++ S
Sbjct: 333 KVGSGEIPLEEEEWENENES 352


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 422 NGNLPEARLSTANWSCMC 369
           N  L E  L +  WSC C
Sbjct: 913 NARLVELSLGSNPWSCRC 930


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -3

Query: 558 TETTFYLPLLHDNIFSQELHNLSDFNRK 475
           +E+  ++  +  N+    +H+LSD+N K
Sbjct: 130 SESKDFIDFIQKNLQCCGVHSLSDYNDK 157


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -1

Query: 287 WFWTSPF 267
           WFW +PF
Sbjct: 179 WFWVTPF 185


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 353 RKGSEHTYNSSWLWTNAPLANSH 421
           + GS+H   ++WL    P+   H
Sbjct: 333 KAGSKHLLQNTWLDPEYPMIRVH 355


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -1

Query: 287 WFWTSPF 267
           WFW +PF
Sbjct: 179 WFWVTPF 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,411
Number of Sequences: 438
Number of extensions: 3957
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)