Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16f19
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.70 
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    29   0.70 
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.9  

>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 376 GPAAARAPPTLYTAPGPR*ATGP 444
           GP+A   PPT +++P P+  +GP
Sbjct: 258 GPSAGFRPPTFFSSPSPQPYSGP 280


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 117 VKQQNKIMEQVKNENFKLPSMIMCGDHSSFTKTELNAKEPKPEEVDKIREKSS 275
           +++Q K++E+V  ENF L   I+C +    +      KE   + V+   E+++
Sbjct: 151 LREQEKVLEKVSRENFGLRIKIVCLEKRLESMAPEQIKEAVKDNVELHAERAN 203


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 178 ILGSLKFSFLTCSMILFCCLTKSFSLFQR 92
           +LGS+ +SFL  S + FC    S  +  R
Sbjct: 547 LLGSIHYSFLFVSFMFFCAFVCSMFIKNR 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,837
Number of Sequences: 5004
Number of extensions: 30773
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)