Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16f19
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0315 - 27822379-27823899 31 0.94
03_04_0069 - 17022468-17023361 30 1.2
10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798 29 2.2
09_04_0258 - 16175258-16176069,16176111-16176414 29 2.2
08_01_1065 - 10868890-10869999,10870925-10871004,10871224-108712... 29 3.8
06_03_0494 - 21407798-21408142,21408238-21408333,21408854-214096... 28 5.0
03_06_0110 - 31727376-31727381,31727554-31727664,31728071-317281... 28 5.0
10_05_0033 - 8415692-8415738,8416084-8416174,8416568-8416821,841... 28 6.6
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 28 6.6
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972... 27 8.7
08_02_1408 + 26860640-26860701,26860811-26860919,26861566-268617... 27 8.7
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 27 8.7
05_04_0454 + 21383068-21384525 27 8.7
04_03_0883 - 20539784-20540308 27 8.7
>02_05_0315 - 27822379-27823899
Length = 506
Score = 30.7 bits (66), Expect = 0.94
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -3
Query: 470 PAARRRLYEGPVAYRGPGAV 411
PAA RRL+EGPVA GAV
Sbjct: 329 PAALRRLFEGPVALDSAGAV 348
>03_04_0069 - 17022468-17023361
Length = 297
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -3
Query: 566 GQRGVERG--DERVQRVREQHHERAHR-QQVGGPAPAARRRLYEGPVAYR 426
G+RGV RG R RVR A R + +G P A RRRL G V R
Sbjct: 248 GRRGVRRGRAGARGARVRRVGGRAARRVRHLGAPPCAPRRRLRRGGVRRR 297
>10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798
Length = 244
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = -3
Query: 590 VLARVPESGQRGVERGDERVQRVREQHHERAHRQQVGGPAPAARRRLYEGPVAYRGPGAV 411
+L R E GVE G + +R+ +H ERA R + RR L P+ P +
Sbjct: 95 LLTRAAEGDGSGVEPGGDARRRLDVEHDERAVRAEA---EVVGRRPLSSSPLVLT-PACI 150
Query: 410 YKVGGARAA 384
GG AA
Sbjct: 151 CVGGGGGAA 159
>09_04_0258 - 16175258-16176069,16176111-16176414
Length = 371
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 560 RGVERGDERVQRVREQHHERAHRQQVGGPAPAARRRLYEG-PVAYRGPGA 414
+G +GD+ ++RE+ ++ R+ P + RR+ +G +A R GA
Sbjct: 288 QGFRQGDQEAAQLREEEQQQERRRPAAFPGASGRRKARDGHGMARRRGGA 337
>08_01_1065 -
10868890-10869999,10870925-10871004,10871224-10871283,
10871490-10871678,10871931-10872092,10872989-10873100
Length = 570
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = -3
Query: 500 AHRQQV-GGPAP-AARRRLYEGPVAYRGP 420
A RQ++ GG P A ++RLY GP +Y+GP
Sbjct: 330 AMRQRLSGGVQPDAPQQRLYMGPFSYQGP 358
>06_03_0494 -
21407798-21408142,21408238-21408333,21408854-21409670,
21410211-21410363,21410506-21410744
Length = 549
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = -3
Query: 605 GPLTEVLARVPESGQRGVERGDERVQRVREQHHERAHRQQVGGPAPAARRRLYEGPVAYR 426
GP +L+RVP + R +ER+ R R A R++ GG A ARR + R
Sbjct: 266 GPARRLLSRVPATADWRTARANERL-RAR-VGAVVARRERAGGEARRARRDFLSAVLNAR 323
Query: 425 GPGA 414
G+
Sbjct: 324 DGGS 327
>03_06_0110 -
31727376-31727381,31727554-31727664,31728071-31728133,
31729202-31729331,31729532-31729701,31729800-31729859,
31729941-31730018,31730108-31730197,31730275-31731118,
31731220-31731281,31731362-31731423,31731511-31731700
Length = 621
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = +3
Query: 399 TDLVHSTGAAIGNGALIQAAAGSGR 473
TD+V S A GNGA I AAAG R
Sbjct: 583 TDVVGSGVPAAGNGAEITAAAGDAR 607
>10_05_0033 -
8415692-8415738,8416084-8416174,8416568-8416821,
8417473-8417482
Length = 133
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 425 GPGAVYKVGGARAAAGPQQTQRV 357
GP +++VG ARA AGP R+
Sbjct: 7 GPRKIWRVGAARAVAGPAAQPRL 29
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -3
Query: 500 AHRQQVGGPAPAARRRLYEGPVAYRGPGAVYKVGGARAAAGPQQTQRV 357
AH+Q G P RR+ +R P A+ + A PQQ R+
Sbjct: 742 AHKQVDGTPEARQLRRIEFSSSKFRSPPALARFNSRNNALSPQQKLRL 789
>11_04_0454 -
17895935-17896093,17896878-17896911,17897114-17897252,
17897487-17897561,17897666-17897945
Length = 228
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 548 RGDERVQRVREQ-HHERAHRQQVGGPAPAAR 459
R D R+++ R + HH+R R++ G PAP R
Sbjct: 18 RQDLRLRQARRRRHHQRHRRRRGGQPAPNRR 48
>08_02_1408 +
26860640-26860701,26860811-26860919,26861566-26861739,
26861843-26861923,26862333-26862536,26862626-26862811
Length = 271
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 262 LILSTSSGFGSFAFNSVLVKEE 197
L+ T SGF F+FNS + +EE
Sbjct: 32 LLFETPSGFAIFSFNSYIFEEE 53
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 551 ERGDERVQRVREQHHERAHRQQV 483
E GD +R+R+ HH++ H + V
Sbjct: 347 EDGDRSNKRIRQSHHDQEHTENV 369
>05_04_0454 + 21383068-21384525
Length = 485
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 581 RVPESGQRGVERGDERVQRVREQHHERAHRQQVGGPAPAARRRLY 447
R +G++ E+ QR +QH R + GG PA RR+ Y
Sbjct: 437 RATNAGKQAKYDHPEQQQRAYQQHR-RNTQSTAGGGGPARRRQYY 480
>04_03_0883 - 20539784-20540308
Length = 174
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 503 RAHRQQVGGPAPAARRRLYEGPVAYRGPGAVYK 405
RA + P PA RR GP+ R GAVY+
Sbjct: 108 RATSRLYARPHPALHRRRSPGPLGTRRGGAVYR 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,021,691
Number of Sequences: 37544
Number of extensions: 263571
Number of successful extensions: 1110
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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