Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16f19
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.4  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 443 GPVAYRGPGAVYKVGGARAAA 381
           G V   G GAV+ VGG+ A A
Sbjct: 177 GAVDIAGSGAVHLVGGSSALA 197


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 134 FILLFN*IVFIVSKMYYKKIMKFPRN 57
           F  L+N ++ ++S +Y  K  K P N
Sbjct: 676 FSQLYNALLILISTVYAVKTRKIPEN 701


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 134 FILLFN*IVFIVSKMYYKKIMKFPRN 57
           F  L+N ++ ++S +Y  K  K P N
Sbjct: 766 FSQLYNALLILISTVYAVKTRKIPEN 791


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 194 VSTHDHTRELEIFVFNLFHDFILLFN*IVFIVSKMYY 84
           + + ++T   ++FVF+  +D+I   N   F+    YY
Sbjct: 108 LGSENYTGISDLFVFDDLNDYINRLNYSAFVNLTAYY 144


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 173 EYDHVWRPF 199
           EYDH W P+
Sbjct: 160 EYDHTWWPY 168


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +1

Query: 364 CVCCGPAAARAPPT 405
           CV C P   + PP+
Sbjct: 389 CVACSPPPRQTPPS 402


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,362
Number of Sequences: 438
Number of extensions: 2662
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)