Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16f18
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0084 + 8142489-8142540,8142703-8142812,8143026-8143251,815...    31   0.95 
10_01_0157 - 1785738-1786247,1786334-1786666,1787248-1787624,178...    29   3.8  

>11_02_0084 +
           8142489-8142540,8142703-8142812,8143026-8143251,
           8156316-8156488,8156649-8157158
          Length = 356

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
 Frame = +3

Query: 168 EEGIRLCISEKISRYL-TINISRADPLPKTICK-----NCLERLEKQHKLVMVMENAANM 329
           E+ I +CI E+++ +L T+  +  + L  T        +C+E ++  H    V +N  + 
Sbjct: 17  EDTIHMCIEEQVATFLHTVGYNLRNRLVHTNYDRSGETDCIEAIDGTHIRASVRKNVESS 76

Query: 330 LKGRKTRAAK 359
            +GRK+ A +
Sbjct: 77  FRGRKSHATQ 86


>10_01_0157 -
           1785738-1786247,1786334-1786666,1787248-1787624,
           1787709-1787934,1788148-1788257,1788420-1788471
          Length = 535

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
 Frame = +3

Query: 168 EEGIRLCISEKISRYL-TINISRADPLPKTIC-----KNCLERLEKQHKLVMVMENAANM 329
           E+ I +CI E+++ +L T+  +  + L +T        +C+  ++  H    V +N  + 
Sbjct: 17  EDTIHMCIEEQVAMFLHTVGHNLRNRLVRTNYGRSGETDCIGAIDGTHIRASVRKNVESS 76

Query: 330 LKGRKTRAAKS 362
            +GRK+ A ++
Sbjct: 77  FRGRKSHATQN 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,060,684
Number of Sequences: 37544
Number of extensions: 305571
Number of successful extensions: 665
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)