Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16f16
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 233 2e-62
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 144 1e-35
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 129 4e-31
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 127 1e-30
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 29 0.61
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 28 1.1
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 28 1.4
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 26 5.6
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 7.5
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 7.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 233 bits (570), Expect = 2e-62
Identities = 100/167 (59%), Positives = 125/167 (74%)
Frame = +1
Query: 130 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYV 309
MREIVH+Q G+CGNQ+G+ FW I+DEHG+D G Y G S+ Q ER+NVY+NEA G KYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 310 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVV 489
PRAVLVDLEP TMD+++ G +G+++RPDN++ G SGAGN WAKGHYTEGA+L + VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 490 RKEAEGCDCLQGFQLVHXXXXXXXXXXXXXXXANLTEEYPDRITATY 630
R+EAE CD LQGFQL H + + EEYPDR+ AT+
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATF 167
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 144 bits (348), Expect = 1e-35
Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 2/168 (1%)
Frame = +1
Query: 133 REIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYVP 312
REI+ +Q G+CGNQIGS+FW+ + EHGI P G + + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 313 RAVLVDLEPSTMDSIRGGPYGSIYRPDNVVC--GASGAGNNWAKGHYTEGADLLETVLDV 486
RA+L+DLEP +++I YGS+Y P+N++ GAGNNWA G Y+ + E ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 487 VRKEAEGCDCLQGFQLVHXXXXXXXXXXXXXXXANLTEEYPDRITATY 630
+ +EA+G D L+GF L+H L + YP +I TY
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTY 169
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 129 bits (311), Expect = 4e-31
Identities = 57/139 (41%), Positives = 87/139 (62%), Gaps = 2/139 (1%)
Frame = +1
Query: 130 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLER--INVYYNEAFGAK 303
MREI+ + VG+ G QIG+ WE+ EHGI P G ++ Q + +++E K
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 304 YVPRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLD 483
YVPR++ VDLEP+ +D +R GPY ++ P+ ++ G A NN+A+GHYT G +L++ V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 484 VVRKEAEGCDCLQGFQLVH 540
+R+ A+ C LQGF + H
Sbjct: 121 KIRRIADNCSGLQGFLVFH 139
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 127 bits (307), Expect = 1e-30
Identities = 60/145 (41%), Positives = 92/145 (63%), Gaps = 8/145 (5%)
Frame = +1
Query: 130 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGA--- 300
MRE++ V VG+ G QIG+ WE+ EHGI P G +S++ + N Y N+ FG
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVH--KNNSYLNDGFGTFFS 58
Query: 301 -----KYVPRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADL 465
K+VPR++ VDLEP+ +D +R GPY ++ P+ +V G A NN+A+GHYT G ++
Sbjct: 59 ETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEM 118
Query: 466 LETVLDVVRKEAEGCDCLQGFQLVH 540
+++VL+ +R+ A+ C LQGF + H
Sbjct: 119 IDSVLERIRRMADNCSGLQGFLVFH 143
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.61
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 190 KTSSQSGSHISRPVRELFLSFSCINNKEFIEN 95
+ QS SHISR ELF + I N F EN
Sbjct: 74 REQEQSNSHISRNENELFSKENSIYNGNFSEN 105
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Frame = +1
Query: 196 VISDEHGIDPCGRYQGDSDLQLERINVYYNE--AFGAKYVPRAVL----VDLEPSTMDSI 357
++ +HG+D G + GDS ++ + Y++ FG P VL VDL P T+ +
Sbjct: 281 IVMGDHGMDNKGNHGGDSFDEINSVLWMYSKKPTFGYLKQPGKVLSANQVDLVP-TLSLL 339
Query: 358 RGG--PYGSI 381
G PYG++
Sbjct: 340 LGNPIPYGNL 349
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/60 (28%), Positives = 34/60 (56%)
Frame = -1
Query: 336 LEIYKNSSRNIFSSKCFVVVDIDPLELQIRVSLVAATGVDSVLVRYHFPKLRANLVPTSP 157
L +Y+ S ++ ++ P E+Q VS+V ++ +S+L +Y +++A LV T+P
Sbjct: 246 LRVYERSDIKTTIDALHLIKNLVP-EIQNTVSVVDSSIKESILKQYWDFRVQAQLVATAP 304
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 229 GRYQGDSDLQLERINVYYNEAFGAK 303
GR + L +N+YY +FGAK
Sbjct: 667 GRTDHRHNFSLHHLNLYYESSFGAK 691
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 310 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGAS 414
P A V+ EP + + G P+ I+ P NV +S
Sbjct: 1588 PSAGSVEREPLFLIAASGSPHAFIWNPHNVSASSS 1622
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.4 bits (53), Expect = 7.5
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 319 VLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGA-DLLETVLDVVRK 495
VL+ + + R G + ++ P+ VC SG G+ K +YT D + +D V +
Sbjct: 316 VLLKNKKKLLPLSRKGTF-AVIGPNAKVCNYSGGGSANLKPYYTVSMYDGIAAKIDGVPE 374
Query: 496 EAEGC 510
A GC
Sbjct: 375 YALGC 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,965
Number of Sequences: 5004
Number of extensions: 45697
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -